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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGGGGCTTTTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGgttactttacaaatgtctggatgcctattaagtgttttggtgtaccagtttttttttttattgactaaattttcttatttag

Basic information

species Glycine max
transcript GLYMA02G16860.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g45350.3 (Oryza sativa), 5'ss of exon 7
ATGTTGGGGCTTTTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGgt--tactttaca----aatgtctggatgcctattaagtgttttggtg-taccagtttttttttttattgactaaattttcttatttag
|||||||  || |||||||||||||||| |||||||| ||||||||||| || || ||||  || |||||||| ||    ||||| ||||||||||| | ||   |   | ||    ||| |       | | ||| |  | |||  | ||  ||| | ||||  ||   ||                 
ATGTTGGAACTATTCGAATTCAGCGACCACACAAAGGACCATTTTATGTATCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaagatgcagtagaatattctctctctttttaggcttcttgaggctaatagtgtgttttactac-aacag---------------

upper sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0104g00630.t01 (Vitis vinifera), 5'ss of exon 7
ATGTTGGGGCTTTTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGgttactttacaaatgtctggatgcctattaagtgttttggtgtaccagtttttttttttattgactaaattttcttatttag----------
|||||||  |  |||| |||||||| ||||| ||||| ||||||||||||||||||||||  |||||||| ||  |||||||||| || ||||||||||||||       | ||  ||   |   |  ||       |    |||   || |||| ||| ||  |    |  |   ||  |           
ATGTTGGAACAATTCGTATTCAGCGGCCCCATAAAGGACCATTTTATGTCTCTCCCAAAAGTATTGATCATCTTGTTGCAAATCTTGGCAAATGGGCAAGgttgtacataagataactttttttttgatagaccgcatatgatactttttcttttctttcttttccttttccttacatgcatttgtcctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326738|gb|FK018895.1|FK018895
EST:     TCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAG                         GTGGTATAAGTATGCTTCTATGGGCTTGACAGTGTTTGGTGCTTATCTGAT
genomic: TCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGgttactttac ... tcttatttagGTGGTATAAGTATGCTTCTATGGGCTTGACAGTGTTTGGTGCTTATCTGAT
EST: gi|192334195|gb|FK026576.1|FK026576
EST:     TCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAG                         GTGGTATAAGTATGCTTCTATGGGCTTGACAGTGTTTGGTGCTTATCTGAT
genomic: TCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGgttactttac ... tcttatttagGTGGTATAAGTATGCTTCTATGGGCTTGACAGTGTTTGGTGCTTATCTGAT
EST: gi|192323713|gb|FK016019.1|FK016019
EST:     TCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAG                         GTGGTATAAGTATGCTTCTATGGGCTTGACAGTGTTTGGTGCTTATCTGAT
genomic: TCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGgttactttac ... tcttatttagGTGGTATAAGTATGCTTCTATGGGCTTGACAGTGTTTGGTGCTTATCTGAT