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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaattatgcagtgtccggctctaatgctttcaaatggtcttctgaatattttaatgaattgtacagattaatgttttgctaacattttggtgatttgcacag

Basic information

species Glycine max
transcript GLYMA02G16010.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16010.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g06740.1 (Oryza sativa), 5'ss of exon 7
AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtg-agagaattatgcagtgtccggctctaatgctttcaaatggtcttctgaatattttaatgaattgtacagattaatgttttgctaacattttggtgatttgcacag
|||||| || ||||| || || || |||||||| || |||||||||||||||||||| || |||||  ||   |  | || |  ||    |  | || |    ||  |       | ||  ||  |   |||| |||                                    
AGCTGTACCATCTGCCGTTTTCTCCCAACCACCCATCGGACAAGTTGGTCTTACTGAAGAGCAGgtatagcatacgacgc-gcatctatataaagtgatgcacaaaagaaagtcaattaaatttgtattttgtgcag------------------------------------

upper sequence: GLYMA02G16010.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G172322_T02 (Zea mays), 5'ss of exon 7
AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaattatgcagtgtccggctctaatgctttcaaatggtcttctgaatattttaatgaattgtacagattaatgttttgctaacattttggtgatttgcacag
|||| | ||||||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||     | |  ||    | |  ||  ||  | |||  |    | | | | |       ||| |  | ||||   | ||||||                       
AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCTTACTGAGGAGCAGgtga-----tgacacatgacctgcatc--atagtgtca--taacttgcagcagaca-----gaaattcatagatgcttattttgcag---------------------

upper sequence: GLYMA02G16010.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G172322_T03 (Zea mays), 5'ss of exon 1
------------------------------------AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaattatgcagtgtccggctctaatgctttcaaatggtcttctgaatattttaatgaattgtacagattaatgttttgctaacattttggtgatttgcacag
                                    |||| | ||||||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||     | |  || || || ||   |  |  |    ||    | | | | |       ||| |  | ||||   | ||||||                       
GACCACTCTTCCATTGTGAATTACAATTTTTGGCAGAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCTTACTGAGGAGCAGgtga-----tgacaca-tgacctgcatcatagtgtc---ataacttgcagcagaca-----gaaattcatagatgcttattttgcag---------------------

upper sequence: GLYMA02G16010.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 7
AGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtga-gagaattatgcagtgtccggctctaatgctttcaaatggtcttctg-----aatattttaatgaattgtacagattaatgttttgctaacattttggtgatttgcacag
|||||| || |||||||| ||||| || ||||| ||||||||||||||||||||||| |||||||||| |  |||| |    |||     |  |     |   | |  ||   ||     ||||||| ||| | || |  ||                                    
AGCTGTACCATCTGCTGTGTTTTCCCAGCCACCTATTGGACAAGTTGGTCTTACTGAAGAACAGgtgatgccaattctcttctgtat--ttgcagcagctgagattcatcccttgcgattaatatttgaatcatttttgtag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424963|gb|CA936483.1|CA936483
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|208088305|gb|GD889473.1|GD889473
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|192311298|gb|FK003769.1|FK003769
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|10237572|gb|BE806460.1|BE806460
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATNTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|208312884|gb|GE111702.1|GE111702
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|254346696|gb|GR856418.1|GR856418
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTC-TACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|19346748|gb|BM891628.1|BM891628
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTG
EST: gi|192314162|gb|FK011534.1|FK011534
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|37995669|gb|CF807258.1|CF807258
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|192311299|gb|FK003770.1|FK003770
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|14258668|gb|BG881576.1|BG881576
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|12773202|gb|BG238129.1|BG238129
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|16997020|gb|BM086392.1|BM086392
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|7924612|gb|AW830638.1|AW830638
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|6134950|gb|AW133343.1|AW133343
EST:     GGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: GGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|8283020|gb|BE020581.1|BE020581
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|208025741|gb|GD826617.1|GD826617
EST:     ACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: ACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|192318301|gb|FK005805.1|FK005805
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTT
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTT