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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGCTACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGgtaatactagatttagtctataatactataattctataatactaccattaaatgctttaccgggatatattttttgaaattcctctgttttttagatttc...

Basic information

species Glycine max
transcript GLYMA02G14110.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 7
AATAGCTACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGgtaatactagatttagtctataatactataattctataatact-accattaaat--gctttaccgggata----tattttttgaaattcctctgt--tttttagatttc--------------------------------------------
|||||| ||||| ||||| || ||||||||||| ||| ||  ||||| ||| | ||||||| | ||||||||||||||||| ||| | || ||  | |||||    |||  | || ||  | |   |    | ||| || | | |   || |    ||||||    || |    | || ||   | || || ||   ||| |  || ||                                            
AATAGCAACTATACTTAAAAGGAACAGCCATGTATTTGCTACTGATAAGGTGTTTGTGAAAATCGATTGGCTTGAGCAACTGAATCGTCACTACATGCAGgtctgtctatctatactcattcaccatcatttgctagaaaattgattgttcatctggctttatgatgacagtactcttgttcccagttactatgaaatttctttatctccccaaaaaaatatgactacaatattcaaattttgttataaacag

upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 6
AATAGCTACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGgtaatactagatttagtctataatactataattct--ataatactaccattaaatgctttac---cgggatatattttttgaaattcctctgttttttagatttc
|||||| |||||||| || |||||||||||||  ||||||||||| ||||| ||||||||| | |||||| | || || || ||  | || ||| |||||||| ||||  ||    | | |  |||| | |||    |||    |  || | | |  ||| |     |  |     |||| |  || ||     |||||   |  
AATAGCAACTATCCTGAAAAGAAACAGCCATGCATTTTCTGATGACAGGGTGTGTGTGAAAATTGATTGGTTGGAACAGCTAAACCGTCAATATATTCAGgtattactgaat---atttttgctactttcatttatgatagagattacactgattattttccatatagattggcagttttcatgtttctaaaccttttaaggt--