1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTCTGGGCCATGTTGGCTGGTTTGCTTTGTGGGTTTGGGAATGGTCTCCAATTTATGGGTGGTCAAGCTGCAGGATATGCAGCAGCAGATGCAGTCCAGgttagttttattacttcgattagaaaaagaatttaatttgaatgcactaacattgtaatggttgtttacatcggctatttaatgggtaaaatatgtttat...
species | Glycine max |
transcript | GLYMA02G12970.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATTTATGGGTGGTCAAGCTGCAGGATATGCAGCAGCAGATGCAGTCCAG GCACTTCCACTTGTAAGCACTTTTTGGGGCGTGGTTCTGTTTGGGGAGTACEST: gi|26269035|gb|CA820098.1|CA820098
genomic: AATTTATGGGTGGTCAAGCTGCAGGATATGCAGCAGCAGATGCAGTCCAGgttagtttta ... gatcaaacagGCACTTCCACTTGTAAGCACTTTTTGGGGCGTGGTTCTGTTTGGGGAGTAC
EST: AATTTATGGGTGGTCAAGCTGCAGGATATGCAGCAGCAGATGCAGTCCAG GCACTTCCACTTGTAAGCACTTTTTGGGGCGTGGTTCTGTTTGGGGAGTACEST: gi|10231695|gb|BE800583.1|BE800583
genomic: AATTTATGGGTGGTCAAGCTGCAGGATATGCAGCAGCAGATGCAGTCCAGgttagtttta ... gatcaaacagGCACTTCCACTTGTAAGCACTTTTTGGGGCGTGGTTCTGTTTGGGGAGTAC
EST: AATTTATGGGTGGTCAAGCTGCAGGATATGCAGCAGCAGATGCAGTCCAG GCACTTCCACTTGTAAGCACTTTTTGGGGCGTGGTTCTGTTTGGGGAGTAC
genomic: AATTTATGGGTGGTCAAGCTGCAGGATATGCAGCAGCAGATGCAGTCCAGgttagtttta ... gatcaaacagGCACTTCCACTTGTAAGCACTTTTTGGGGCGTGGTTCTGTTTGGGGAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTGGGCCATGTTGGCTGGTTTGCTTTGTGGGTTTGGGAATGGTCTCCAATTTATGGGTGGTCAAGCTGCAGGATATGCAGCAGCAGATGCAGTCCAGgttagttttattacttcgattagaaaaagaatttaatttgaatgcactaacattgtaatggttgtttacatcggctatttaatgggtaaaatatgtttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaagaa