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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTGTCAACGGATTCTTTGCAGCATGTTCGCTCTGCTTTGGCTTCCGTGATAATGGGAATGGCTCCAGTGTTAGGAAAGgtataggtgccaaatagcattctttacaattattgtggtctaagcaagaaatatcattgtccatgtcattcatgcttaaatgtgggttgcgtgtccttca...

Basic information

species Glycine max
transcript GLYMA02G10790.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 7
GAATTGTCAACGGATTCTTTGCAGCATGTTCGCTCTGCTTTGGCTTCCGTGATAATGGGAATGGCTCCAGTGTTAGGAAAGgtataggtgccaaatagcattctttacaattattgtggtctaagcaagaaatatcattgtccatgtcattcatgcttaaatgtgggttgcgtgtccttca--------------------------------------------
||||||||| | ||||| |  ||||||||||| || ||||||||||| || || ||||||||||| || || || ||||||||  |   || ||||| | ||| | | | ||    ||   |||   | |    |  ||  | |   | ||  || | |  |||    | |   | |||||                                            
GAATTGTCATCAGATTCATCTCAGCATGTTCGTTCAGCTTTGGCTTCAGTTATTATGGGAATGGCCCCGGTCTTGGGAAAGgt-cacaagcaaaatatc-ttcataaaattttacttgaaataattcaaattatttgtttgcaacagctttactgttcagttgtttactaccattgcttcacgattgttggaaacctgacttgctttgtttctggcattctgtag

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G102858_T01 (Zea mays), 5'ss of exon 7
GAATTGTCAACGGATTCTTTGCAGCATGTTCGCTCTGCTTTGGCTTCCGTGATAATGGGAATGGCTCCAGTGTTAGGAAAGgtataggtgccaaatagcattctttacaattattgtggtctaagcaagaaatatcattgtccatgtcattcat-gcttaaatgtgggttgcgtgtccttca------
||||| ||| | ||||| |  ||||||||||| || |||||||| || || || |||||||||||||| || || |||||||| |  |  |    ||||| |   | |||| ||    || | |   | ||| || | | | || |||||   | |  | | |    ||| |   |  |  |      
GAATTATCATCAGATTCATCTCAGCATGTTCGTTCAGCTTTGGCATCGGTTATTATGGGAATGGCTCCTGTATTGGGAAAGgtgtgagctc----tagcagtgaatgcaat-atatcagtttgatggaaaaa-attactcttca-gtcatcagtagtgttagttaccgtttctcctgttgtaatgggg

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 6
GAATTGTCAACGGATTCTTTGCAGCATGTTCGCTCTGCTTTGGCTTCCGTGATAATGGGAATGGCTCCAGTGTTAGGAAAGgtataggtgccaaatagcattctttacaattattgtggtctaagcaagaaat--atcattgtccatgtcattcatgcttaaatgtgggttgcgtgtccttca--
|||||||||   ||||| |  |||||||| |||||||| |||||||| ||  |||||||||||||||| || ||||||||||||    | |  ||| |     | | || ||      ||  ||| ||   ||  |||| |   ||| |||||||||      |    |     |||| |     
GAATTGTCATTAGATTCGTCCCAGCATGTCCGCTCTGCCTTGGCTTCAGTTTTAATGGGAATGGCTCCCGTCTTAGGAAAGgtaagacttcataatggt----tgtgcagttgacacagttaaaggaaaggattcatcaatagtcatttcattcatggaagggttgaagacaattgtcatggttg

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S117_137V6.1 (Physcomitrella patens), 5'ss of exon 6
GAATTGTCAACGGATTCTTTGCAGCATGTTCGCTCTGCTTTGGCTTCCGTGATAATGGGAATGGCTCCAGTGTTAGGAAAGgt-ataggtgccaaatagcattctttacaattattgtggtctaagcaagaaatatcattgtccatgtcattcatgcttaaatgtgggttgcgtgtccttca---
|| |||||||| ||||| | ||| ||||| ||  ||||  | || || || || ||||||||||||||| ||||||||||||| | ||  |  || |       ||| |  ||| |  |     | |     || | |||  || ||  | |||  |||     | | |  |   ||  |     
GAGTTGTCAACTGATTCATCGCAACATGTACGAGCTGCACTTGCATCGGTTATTATGGGAATGGCTCCACTGTTAGGAAAGgtcagagaagttaactcttggattttcctgttagtacgac---aaccttgtattttattaaccttgcgaatca-actttgccctagatgacacttcgctggcaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7146818|gb|AW508740.1|AW508740
EST:     GCTCTGCTTTGGCTTCCGTGATAATGGGAATGGCTCCAGTGTTAGGAAAG                         GATGCAACAATTGAGCGGCTGCTTCCTATTAGTCTCTCCCTGTGGAAGGAT
genomic: GCTCTGCTTTGGCTTCCGTGATAATGGGAATGGCTCCAGTGTTAGGAAAGgtataggtgc ... tttattgcagGATGCAACAATTGAGCAGCTTCTTCCTATTTTTCTCTCCCTTTTGAAGGAT