Sequence
atgc intronic sequence ATGC exonic sequenceCATTGAACCACGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTACTTGAAGGATAAAGTGGATGCAACATTTATAAGAGAACGTCGTGCCATTAAGgtttgaaattgttcctatcatgtcattttcagaccaaaaggaaaagccataaacttcaaatttgaaatttgcatgaaatatgactaattgagaaacatag...
Basic information
species | Glycine max |
transcript | GLYMA02G08920.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G08920.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G378836_T01 (Zea mays), 5'ss of exon 8
CATTGAACCACGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTACTTGAAGGATAAAGTGGATGCAACATTTATAAGAGAACGTCGTGCCATTAAGgtttgaaattgttcctatcatgtcattttcagaccaaaaggaaaagccataaacttcaaatttgaaatttgcatgaaatatgactaattgagaaacatag--------
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AATCGAGCCTCGGGCTCCTGAATGGTATTTTGCTCAGAAAATTGACTATCTAAGAGAAAAGGTTCACCCAGAGTTTGTTCGAGAACGACGTGCAATGAAGgttag------ttcatatgatag-actaggaagtgtgactatttggactttgttaataggttttttgtttgttcatgac-tcactagaccatagtcacaaagttcccg
upper sequence: GLYMA02G08920.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 7
CATTGAACCACGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTACTTGAAGGATAAAGTGGATGCAACATTTATAAGAGAACGTCGTGCCATTAAGgtttgaaatt---gttcctatcatgtcattttcagaccaaaaggaaaagccataaacttcaaatttgaaatttgcatgaaatatgac-taattgagaaacatag
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CATTGAGCCGAGGGCCCCAGAATGGTACTTTGCTCAGAAGGTTGACTATCTGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAGgttaacaccttgtatctttatctgttcatattttggtccaatgaatgtgcatt---ctatataagctgcatgcgggttaaacaaaatgccatcttaaaccata-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298164967|gb|HO011016.1|HO011016EST: TGAAGGATAAAGTGGATGCAACATTTATAAGAGAACGTCGTGCCATTAAG AGGGAGTATGAAGAGTTCAAAGTGAGGATTAATGCACTGGTGGCTTTGGCA
genomic: TGAAGGATAAAGTGGATGCAACATTTATAAGAGAACGTCGTGCCATTAAGgtttgaaatt ... gttgacacagAGGGAGTATGAAGAGTTCAAAGTGAGGATTAATGCATTGGTGGCTTTGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATTGAACCACGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTACTTGAAGGATAAAGTGGATGCAACATTTATAAGAGAACGTCGTGCCATTAAGgtttgaaattgttcctatcatgtcattttcagaccaaaaggaaaagccataaacttcaaatttgaaatttgcatgaaatatgactaattgagaaacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaggaaa