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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCAGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAGTTCTTGTCGCAAATCTCAATCCCGATgtgagtatgctgccttgatatttctgccttttttctagaaagttctctccatttttattaaatatatttggcttgaatttttttccag

Basic information

species Glycine max
transcript GLYMA02G08870.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08870.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G43190.3 (Arabidopsis thaliana), 5'ss of exon 13
TGCTGCAGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAGTTCTTGTCGCAAATCTCAATCCCGATgtgagtatgctgccttgatatttctgccttttttctagaaagttctctccatttttattaaatatatttggcttgaatttttttccag
  |  |||| ||||||||||||||||| ||||| |||||||| || ||||| || |||||||| ||||||||||| |||||| | || || ||| | ||||| |||  |     |     |||     |  |  ||      ||||  | || |||   |||  ||   |  |     ||| || |||
CACATCAGCGATTGCAGCTGCCTTTGGAGGAGGCTTGCCTCCGGGTATAACCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGATgtaagttggtcatttcccgttttgcttttgataacttagtttttcttacaatattttccaaacttaccagattca---tttgtttcag

upper sequence: GLYMA02G08870.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 5'ss of exon 12
TGCTGCAGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAGTTCTTGTCGCAAATCTCAATCCCGATgtgagtatgctgccttgatatttctgcctttt-ttctagaaagttctctccattt-------ttattaaatatatttggcttgaatttttttccag-------------------------------------------
|||  | || ||||| ||||||||||| ||||||||||| ||||| || | ||| |||||||| |||||||| || |||||| | ||||| ||||| || ||  |  | ||    | |   |||| | | || ||||      |  |||  ||||        ||||  || | ||    |  |||||| |    |                                           
TGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTGGAATTAGTGGGACAAATGACAGGTGTACTGTCCTTGTCTCTAATCTAAATCCTGACgtatgacttctctactcacccttcttcttcttcttcttcttcttcttctttatttatttttcctattttatcttttgtattaaaattttctgttggctcttctaccacttatgtttgggaactttttctgtcatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5057797|gb|AI736273.1|AI736273
EST:     CTGGAACAAATGAAAGGTGTACAGTTCTTGTCGCANATCTCAATCCCGAT                         AGAATAGATGAGGATAAAATGTTCAACTTGTTCTCCATTTATGGGAACATT
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTCGCAAATCTCAATCCCGATgtgagtatgc ... ttttttccagAGAATAGATGAGGATAAAATGTTCAACTTGTTCTCCATTTATGGGAACATT