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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACTCCTACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAGgtacggcctttgctttttcctcctatatggccactagactagtaggcaacaaaataggacatactgtattttttgctatgttgtgactacggactcaattatttattttatttgtcaaatatgagtcttctacattatcttctacttagcattgtcttgtgatcttgtatttgcattattctag

Basic information

species Glycine max
transcript GLYMA02G08360.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 9
CGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACTCCTACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAGgtacg--gcctttgctttttcctcctatatggccactagactagtaggcaacaaaataggacatactgtattttttgctatgttgtgactacggactcaattatttattttatttgtcaaatatgagtcttctacattatcttctacttagcattgtcttgtgatcttgtatttgcattattctag
 ||||||| || |||||||| |||||||||||||| || || |||||| | ||||| ||||| |||||||||||||| || ||||| ||| |  | |||||||||  ||||||  |||||||      |   ||      ||   ||  ||    |  |   ||  ||  |||| |  |||                                                                                                         
AGAAATCTGCTGCGTTTACGAGGGTTCTGTATGACACCCACAGAAAGGTTGCTTGTGTATCCATACATGGCTAATGGAAGCGTTGCGTCACGTCTTAGAGgtacgttgccttttttttttccaatctgacatccctgtatctttcagataattggagggttgat-ttgggttttatattatag-------------------------------------------------------------------------------------------------------

upper sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 9
CGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACTCCTACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAGgtacggcctttgctttttcctcctatatggccactagactagtaggcaacaaaataggacatactgtattttttgctatgttgtgactacggactcaattatttattttatttgtcaaatatgagtcttctacattatcttctacttagcattgtcttgtgatcttgtatttgcattattctag
 | || || || ||  | ||||| || || ||||| ||||| ||| || ||||||| ||||| |||||||||||||| ||||| || ||| | ||  |||||   |||||    ||     | | |      | || |    |    || |   |   |||   |   ||   ||||      | | |   | | ||  ||||    ||                                                                           
AGGAACCTGCTTCGGCTCCGTGGATTTTGCATGACGCCTACAGAACGGTTACTTGTCTATCCCTACATGGCTAATGGGAGTGTCGCATCACGATTGCGAGgt---gccttaatcttccttactttttcttagagtaaatccat---taatagtttcttacacgtttgtttgcatgcttaaacataaat---ggcacagctattatggtt---------------------------------------------------------------------------

upper sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 9
CGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACTCCTACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAGgtacggcctttgctttttcctcctatatggccactagactagtaggcaacaaaataggacatactgtattttttgctatgttgtgactacggactcaattatttattttatttgtcaaatatgagtcttctacattatcttctacttagcattgtcttgtgatcttgtatttgcattattctag
 |||||||  | ||| | ||||| ||||||||||| || || |||||| | ||||| ||||| |||||||||||||| |||||||| ||| | ||||||||||           ||||  |  ||||  ||   |    || |    |     ||    |||  |  |  | |    |       |  |    || || | ||||||   || ||   || |  ||                                                          
AGAAATCTATTGCGTCTTCGTGGATTCTGTATGACACCAACAGAAAGGTTGCTTGTGTATCCATACATGGCTAATGGAAGTGTTGCGTCACGTTTAAGAGgta-----------tttttttagtatagtgctgttcacgtatttta-atttgtatctttcatgttacacctctc-taacaacagcatcaaactctgaactttttattactttggttttat-tctgtag--------------------------------------------------------

upper sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 9
CGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACTCCTACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAGgtacggcctttgctttttcctcctatatggccactagactagtaggcaacaaaataggacatactgtattttttgctatgttgtgactacggactcaattatttattttatttgtcaaatatgagtcttctacattatcttctacttagcattgtcttgtgatcttgtatttgcattattctag
|| |||||||||||| | ||||| || || ||||| ||||||||| |||| ||||| ||||| || ||||||||||| || ||||| ||||| ||||||||||  |||| |     |||| |   ||   ||| | ||||  |   |||     |    || |  | |||| ||  ||  ||        ||| |   ||  ||   |  |                                                                         
CGGAATCTCCTCCGTCTTCGTGGTTTTTGCATGACACCTACTGAACGGCTGCTTGTTTATCCGTATATGGCTAATGGAAGCGTTGCATCATGTTTAAGAGgtaatgcctgtcaacattccacactta---ccagt-gacttcttctcaattgcttt---cacaaggaatttcttttta-atttcattggtggaat---tttcttgcctggt-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193359325|gb|FK325866.1|FK325866
EST:     ACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAG                         AGCGTCCGGCACATCAACAACCCCTTGATTGGCCGACAAGGAAAAGAATAG
genomic: ACTTGTATATCCTTACATGGCTAATGGTAGTGTTGCCTCATGCTTAAGAGgtacggcctt ... attattctagAGCGTCCGGCACATCAACAACCCCTTGATTGGCCGACAAGGAAAAGAATAG