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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgcttttacttatttggctacgtaaagaggttttctactttctgtctaacccattttattttcctgaaatag

Basic information

species Glycine max
transcript GLYMA02G07910.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07910.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G381744_T01 (Zea mays), 5'ss of exon 7
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgt---ttgtgcttttacttatttggctacgtaaagaggttttctactttctgtctaacccattttattttcctgaaatag-------------------------
||| |||||||||||||||||||| |||||||||||| |  | || ||||| || || ||  ||||||| || ||   || || ||||||  || |   |            |     | ||||     ||  ||| |  |   ||||  | |                         
GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATTgtaagttctgattttacagatgtatttgttcctgtgtcgtggtagcattcttaaatacttattctgataatctgattttggtttttgtgtttttgaattatatag

upper sequence: GLYMA02G07910.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G083095_T03 (Zea mays), 5'ss of exon 7
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgt---ttgtgctttt----acttatttggctacgtaaagaggttttctact-ttctgtctaacccattttattttcctgaaatag
||| |||||||||||||||||||| |||||||||||  |  |||| ||||| || || ||  ||||||| || ||   ||||| ||      |  ||||||    |||      ||     ||| |||||  |      |||| | |  |  | ||||
GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTGAGAAGATTCTGCCGTACTACTGGGGCTGTTGCAATTgtaagttgtgattcatcagatgtatttgttaccgtgtcatagtagcacactattctgattttggatttttttctctcaaatatag

upper sequence: GLYMA02G07910.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G03960.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgcttttactt----atttggctacgta---aagaggttttctactttctgtctaacccattttattttcctgaaatag
| | |||||  |||||||||||||||||||||||||  | || |||||||| ||| | ||  |||| |||   ||  ||| | ||| ||    || ||  |  |||   ||| |   || ||   |   | | |  | ||| ||| ||   ||| ||
GATAATGGTATTGAAAATCAGCTCAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATgtaagtgttattaattggctatctgaatgagtatctaagggtggttttatcctagcttttaatcctttaattatc---aaacag

upper sequence: GLYMA02G07910.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g07460.t01 (Vitis vinifera), 5'ss of exon 7
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgcttttacttatttggctacgtaaagaggttttctactttctgtctaacccattttattttcctga-aatag
 ||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||| ||  |||||||  | ||  |    ||  |       | |   | || |  || | || |   |   ||||    ||  ||    ||| || ||
ACTTATGGTTTTGAAAATCAGCTCAAAGTTTGAACTGCGGCGATTTTGCCGTACAACTGGAGCTGTTGCAGTTgtaagcatattagcactggatgttgtttgaaaaa-ttctttaatggtttcataacatgcttatttaatgtgacaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198017|gb|HO039556.1|HO039556
EST:     CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATG                         CTAAAACTTTGCCAACCAAACCC
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCC
EST: gi|151397877|gb|EV267750.1|EV267750
EST:     CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATG                         CTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: gi|193420636|gb|FK390559.1|FK390559
EST:     CCGGACAACCGGCTCTGTTGCCATG                         CTAAAACTTCGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
genomic: CCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: gi|193347893|gb|FK312785.1|FK312785
EST:     CCGGACAACCGGCTCTGTTGCCATG                         CTAAAACTTCGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
genomic: CCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: gi|14011960|gb|BG726882.1|BG726882
EST:     CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATG                         CTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: gi|193427201|gb|FK393451.1|FK393451
EST:     CCGGACAACCGGCTCTGTTGCCATG                         CTAAAACTTCGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
genomic: CCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: gi|254342218|gb|GR853355.1|GR853355
EST:     CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATG                         CTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT