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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACATGGAGCTTATGGTGAATTACTTGACAAACGGTGGCGCAGTGAACTAAAAAGCCTCCTGGATCGAGGTTGGGTTGTTGCCTATGCCGATGTTAGgtagtattcacattatttaatggccatgtactcaatgcttattcttatggatattcttttagtgttaaatttattttctccatagtcttatctcttatatgatagttttggtggcctgtttcag

Basic information

species Glycine max
transcript GLYMA02G06940.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06940.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G065665_T01 (Zea mays), 5'ss of exon 7
ATGGACATGGAGCTTATGGTGAATTACTTGACAAACGGTGGCGCAGTGAACTAAAAAGCCTCCTGGATCGAGGTTGGGTTGTTGCCTATGCCGATGTTAGgtagtattcacattatttaatggccatgtactcaatgcttattcttatggatattcttttagtgttaaatttattttctccatagtcttatctcttatatgatagttttggtggcctgtttcag
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ATGGACATGGTGCTTACGGTGAAATTCTGGATAAACGTTGGCGCAGTGAATTAAAAACTCTACTGGATCGTGGTTGGGTGATTGCATATGCTGATGTTAGgta-tgtctaccctattt------caattacct--ttattattgctatgaa-atgaacttggta--agcttcatattaacttctgtcatccgcctg----gataatttcga-ggcat-------

upper sequence: GLYMA02G06940.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0255g00060.t01 (Vitis vinifera), 5'ss of exon 8
ATGGACATGGAGCTTATGGTGAATTACTTGACAAACGGTGGCGCAGTGAACTAAAAAGCCTCCTGGATCGAGGTTGGGTTGTTGCCTATGCCGATGTTAGgtagtattcacattatttaatggc-catgtactcaat-----gcttattcttat-------ggatattctt--ttagtgttaaatttattttctccatagt----cttatctctta--tatgatagttttggtggcctgtttcag
|||| ||||||||||||||||| |||||||||||| |||||||  ||||| | |||||||| || ||||| |||||||||||||| ||||| ||||| |||||   ||| ||  |  |  | |  ||  | ||  ||       || |||| ||        ||||       ||  | ||| |||| |   |  |||       |||||| ||||  |||||| | ||  |||  || | | ||
ATGGCCATGGAGCTTATGGTGAGTTACTTGACAAAAGGTGGCGTGGTGAATTGAAAAGCCTTCTTGATCGTGGTTGGGTTGTTGCTTATGCTGATGTCAGgtatgtttctcagcaaatgctagttcagattcttgatcatgaaattgttctcatttgcttcagataactcaaatttatattatatttttaaacatcatttcactgcttatcgcttaattatgatgggttaagtgctctttcttag