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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattattatcactctcaaaacaatgtttccctttcttagttttccaatgctctcacttcattgaggttataatatgtttttgggtttctaatag

Basic information

species Glycine max
transcript GLYMA02G06790.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g03140.1 (Oryza sativa), 5'ss of exon 5
GTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaat-tattatcactctcaaaacaatgtttccctttcttagttttccaatgctctcact------tcattgaggttataatatgtttttgggtttctaatag---------
|| | || | | ||  || ||     | ||||   | |   ||| ||| || || ||| | ||||||||||||||||||||||| || ||| ||||||||||||| |    || |  |  |||  |||          |     | | | || |||  ||      ||  ||| ||   |||||  |      ||   | ||          
GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaa-ttggcactaacttccacag

upper sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G843914_T01 (Zea mays), 5'ss of exon 8
GTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattattatcactctcaaaacaatgtttccctttcttagttttcca-atgctctcacttcattgaggttataatatgtttttgggtttctaatag
||   || | | ||  || ||||  || ||||   |||   ||| | | || || ||| | || |||||| |||||||||||||||||||| ||||||||||||| | | |     |   |            |||||| |   |  |  |||| |    |   || |||   | | |  |  |   ||   |    
GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCATgtaat-actctactgattgtagttcgccaaaaatttcttggcacttgacgtgctttgttcttgatggggtcccattgtaatact---ttcacag---

upper sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 5'ss of exon 9
GTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattattatcactctcaaaacaatgt--ttccctttcttagttt--tccaatgctctcacttcattgaggttataatatg---tttttgggtttctaatag
 |||||||||| || |||||||||||| ||||   ||||| ||||| | ||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||||||| ||  |   |    |||| |||   ||  |     ||  ||  |  || | |   | |       | | || ||| |   || ||    ||  || ||
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCATTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccttcttgattaaactatgaaatttgcaaggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacag

upper sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
GTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattatt-atcactctcaaa--acaatgtttccctttcttagtt-ttccaatgctctcacttcattgaggttataatatg---tttttgggtttctaatag
 |||||||||| || |||||||||||| ||||   ||||| ||||| | ||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||||||| ||  |||    | |||  |  |  ||| |     |   || ||  || | |   | |       | | || ||| |   || ||    ||  || ||
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgattaaactatgaaatttgcagggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacag