Sequence
atgc intronic sequence ATGC exonic sequenceTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagctatatcagatcacaaaattttttcgtaattttttgttaccaacaagcagatactgatgtatcccatctctcactcctttctttgtttttgtctttttcctttccgtatgaaactttccgatcagttcag
Basic information
species | Glycine max |
transcript | GLYMA02G06720.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 7
TCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagctatatcagatcacaaaattttttcgtaattttttgttaccaacaagcagatac--tgatgtatcccatctctcactcctttctttgtttttgtctttttcctttccgtatgaaactttccgatcagttcag
|| ||||| ||||||||||||||||||||| |||||||||| |||||||| |||||| || |||||||| | || ||||| ||| ||||| ||||||| | | || | | ||| | | || | |||||| || ||| | | | | | || | || ||| | | ||
CCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGgtacgttcaattaccatgtttgaatttataaatctgattcagcatacttggtcagatatgttgctgttgcaaaattttgatcagttcatcaaaaaatggcttgtgctcttatcag----------------------
upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 6
TCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagctatatcagatcacaaaattttttcgtaattttttgttaccaacaagcagatactgatgtatcccatctctcactcctttctttgtttttgtctttttcctttccgtatgaaactttccgatcagttcag
|| ||||| ||||| ||||||||||||||| |||||||||| ||||| || ||||| ||||||||||| | || ||||| ||| ||||| ||||||| || ||| | || |||||| |||||| | || ||| || | ||| | | | | | | ||| | |||| || | ||| | | | | | |||
CCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCTGTAGTTGTGAAAGAATGGAGgtaggc-----cagttagcatg--tttttcttaatttggtcttgt----gggcatat-ttcatggttagaagagagcctctgtgtgtgaaatttggatcatttcattccaacatggt-ttgttcactta--ccag
upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 5'ss of exon 7
TCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagctatatcagatcacaaaattttttcgtaattttttgttaccaacaagcagatactgatgtatcccatctctcactcctttctttgtttttgtctttttcctttccgtatgaaactttccgatcagttcag
||| ||||||||||| |||||||| || ||| | ||||| |||||||| || |||||||||||||| |||||||| ||||| || ||| | || |||||||||| | | | || || | | || || | || || | ||| | | ||| | | || || || | | || ||
TCTTATTGAGTATAGGGCACATCCCTTTTGGATGCAAAAGTATTGTCCTTCACATGAGCGTGATGGAACTCCTCGGTGTTGCAGTTGTGAGCGAATGGAGgtcagttgttcgatatagcatt-tctgttaataggaaaataaatttaagaatctgattcgaaaa----ccagatgttgttctgtttttggctcatggtttcag--------------------------------
upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 11
TCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagctatatcagatcacaaaattttttcgtaattttttgttaccaacaagcagatactgatgtatcccatctctcactcct--ttctttgtttttgtctttttcctttccgtatgaaactttccgatcagttcag
| |||||||||||||||||||||||| | ||| | || ||||| || ||||||| |||||| |||||||| |||||||| ||| || || ||||| || | | | | |||| | || | | | | | || | | | | | || ||| | || | |||| || || | | | || ||| | || | | | |||
AGAAACAGAGTATAGAGCACATCCTTTCTGGATGCAAGAGTACTGTCCCTCACATGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAACGAACAGAGgttagttggaagaaaatacaacctcccatcccacatactcactga-agaaatcttctcgtagcttgacagattaacaactacagatttctatttttcgttttgtatttctttatagaaaatctgccaacccatgcag
upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
TCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagctatatcagatcacaaaattttttcgtaattttttgttaccaacaagcagatactgatgtatcccatctctcactcctttctttgtttttgtctttttcctttccgtatgaaactttccgatcagttcag
|| |||||||||||||||||||| |||||| | ||||| || ||||| || || |||| |||||| |||||||| |||||||| ||| ||||| ||||||| || | | | |||| || | | | | | | | || | || || | || || || | | | | | | ||| | || | | | |||
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatccca--cacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15288302|gb|BI472193.1|BI472193EST: CGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAG TCAGTGGATACCAAATATCTGTTGCTTGACGATGGTCGAAAGCTGTGCCTG
genomic: CGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagctata ... atcagttcagTCAGTGGATACCAAATATCTGTTGCTTGACGATGGTCGAAAGCTGTGCCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagctatatcagatcacaaaattttttcgtaattttttgttaccaacaagcagatactgatgtatcccatctctcactcctttctttgtttttgtctttttcctttccgtatgaaactttccgatcagttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG