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TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatatatattttttcttattagtaccttagttttctatattcactgtgccattgaaagaattgcccaacacttcttattgccag
species | Glycine max |
transcript | GLYMA02G04320.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|120490920|gb|EH219087.1|EH219087
genomic: TCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACA-TTGCTCTGEST: gi|13125648|gb|BG316218.1|BG316218
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|14999822|gb|BI320636.1|BI320636
genomic: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|20497810|gb|BQ272740.1|BQ272740
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAACAACAATTGCTCTGEST: gi|120531769|gb|EH259902.1|EH259902
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|193383290|gb|FK348643.1|FK348643
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: ATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|120530295|gb|EH258429.1|EH258429
genomic: ATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|37996526|gb|CF808115.1|CF808115
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|213594062|gb|DB961950.1|DB961950
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGEST: gi|13562529|gb|BG550749.1|BG550749
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|120495797|gb|EH223964.1|EH223964
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|20448749|gb|BQ252873.1|BQ252873
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: GTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|192313436|gb|FK005516.1|FK005516
genomic: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|6566266|gb|AW233945.1|AW233945
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: GTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTGEST: gi|22522287|gb|BU081107.1|BU081107
genomic: GTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
EST: AGGGGGTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG ATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
genomic: AAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatata ... ttattgccagATTTTGGTTCCAGTCCCACAATACCCACTCTACTCAGCAACAATTGCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCCAGAGCTCATATATCTCACTGATGGTGCAAGCAAAGGAGTGATGCAGATATTAAATACTATCATCAGGGGTCAAGACGATGGGgtaatatatatattttttcttattagtaccttagttttctatattcactgtgccattgaaagaattgcccaacacttcttattgccag
- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAGAT