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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTCCAATGCCAGATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgatttcatccaaaccatacgtgcttcagaatttataggagaatggatatatagttgagtagtttgattcagtatatacacagttcaaatatcaat...

Basic information

species Glycine max
transcript GLYMA02G03080.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g13720.1 (Oryza sativa), 5'ss of exon 7
GAGAGTCCAATGCCAGATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgta--ttgatttcat--ccaaaccatacgtgcttcagaatttataggagaatggatatatagttgagtagtttgattcagtatatacacagttcaaatatcaat
|| ||||||||||| ||||||||||| || ||||| ||||| |||||||| |  | |||  | ||||||    |||  ||    |||  ||| |    |||   || | |  |  | |     |  |    | |  | ||   | || |    | |||| ||||||    
GAAAGTCCAATGCCCGATCCATCTGAGCTCTTTACAAATGTATATGTTAATGACTGCGGTTTGGAGgtaagcagatgccaagagcaattcattcagaattccatatatcttagtaatttctcgtgcatgcaaatgttatggaactgttttcctaaagtttaaatat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901166|gb|BE610134.1|BE610134
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|51338002|gb|CO981868.1|CO981868
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|213593195|gb|DB975675.1|DB975675
EST:     TATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: TATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|151406873|gb|EV276688.1|EV276688
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|9819785|gb|BE555298.1|BE555298
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|13482427|gb|BG511770.1|BG511770
EST:     GTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: GTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|58016185|gb|CX702927.1|CX702927
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|7233061|gb|AW568412.1|AW568412
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|15199292|gb|BI423757.1|BI423757
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|254323000|gb|GR839913.1|GR839913
EST:     TCTATGTTAAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: TCTATGTT-AAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|22540994|gb|BU090837.1|BU090837
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAGTTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|13787399|gb|BG649991.1|BG649991
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|58019317|gb|CX706059.1|CX706059
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|151406023|gb|EV275838.1|EV275838
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|6666275|gb|AW277734.1|AW277734
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|27427278|gb|CA938798.1|CA938798
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
EST: gi|58016174|gb|CX702916.1|CX702916
EST:     ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAG                         ACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA
genomic: ATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGgtattgattt ... tgtattgcagACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAATTCAGA