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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttattctcaacctggcatttttattatctgtttttaactttctatctgaattctgatgtgttaccatgaataaattttgcacttatttgacag

Basic information

species Glycine max
transcript GLYMA02G01220.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 7
GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttattctcaacctggcatttttattatctgtttttaactttc-tatctgaattctgatgtgttaccatgaataaattttgcacttatttgacag
|| ||||| ||||| |||||||| ||| | ||||||||||||||||| |||||||||||  ||    |  |||   ||    ||     || |    | | || | | ||    || |  ||    | ||  |                        
GTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTGgtgggt--gcttacaaataggatccttggaattcagcagctgatttgcgtttcctgcttttcctggcaaaacaacag-----------------------

upper sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 7
GTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttattctcaacctggcatttttattatctgtttttaactttctatctgaattctgatgtgttaccatgaataaattttgcacttatttgacag
|| ||||| ||||| |||||||| ||| | ||||||||||||||||| |||||||||||  ||    |  |||   ||    ||     || |    | | || |  |      | |  | ||  |  |  || |                     
GTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTGgtgggt--gcttacaaataggatccttggaattcagcagctgatttgcgtttcctgcttttct-tggcaaaacaaacag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207824407|gb|GD793767.1|GD793767
EST:     CTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
genomic: CTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: gi|15286220|gb|BI470111.1|BI470111
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: gi|298195934|gb|HO044325.1|HO044325
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: gi|207706316|gb|GD686934.1|GD686934
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: gi|207846087|gb|GD820304.1|GD820304
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTA
EST: gi|207807268|gb|GD779339.1|GD779339
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: gi|12773476|gb|BG238403.1|BG238403
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GGCAAAGGCGAACCAAACATATCTTATATCTGTTCT
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCT
EST: gi|37994511|gb|CF806247.1|CF806247
EST:     CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: gi|27425418|gb|CA936938.1|CA936938
EST:     GTGACTTTGGGAGTGCAAAAGTCTTG                         GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
genomic: GTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: gi|4396096|gb|AI495093.1|AI495093
EST:     CTCACACTCACCAGCTAAAGATNTGTGACTTTTGGAGTGCANAAGTCTTG                         GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA