Sequence
atgc intronic sequence ATGC exonic sequenceTGCAATAAAAGCAAAAGAACTATTTCTTCGAGATGTAAACTACATCATTCGTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAGgtatttagagattctacttggcctcatggaaataaacaatttaactagccaaggcaaggagaatagtagtgccatcaatagcagttcttgatctacattt...
Basic information
species | Glycine max |
transcript | GLYMA02G01060.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G01060.3 (Glycine max), 5'ss of exon 7
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 6
TGCAATAAAAGCAAAAGAACTATTTCTTCGAGATGTAAACTACATCATTCGTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAGgtatttagagattctacttggcctcatggaaataaacaatttaactagccaaggcaaggagaatagtag-tgccatcaatagcagttcttgatctacattt------------------------------------------------------------
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TGCCATTAAGGCAAAAGAACTTTTTCTCAGAGATGTGAACTATATCATCCGAGCAAAGGAGGTTCTTATCGTGGATGAGTTTACTGGTCGTGTAATGCAGgtacttgtgtatatt------catcttaataagaaatatcactatttatcattttagtgatctcagtggctactgctgataaatattcttaggccacaagaacaacatagattaaaaaaaaacagtacgtaggaacccactgaataagttatttctttcag
upper sequence: GLYMA02G01060.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 7
TGCAATAAAAGCAAAAGAACTATTTCTTCGAGATGTAAACTACATCATTCGTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAGgtatttagagattcta---cttggcctcatggaaataaacaatttaactagccaaggcaaggagaatagtagtgccatcaatagcagttcttgatctacattt---
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TGCAATAAAGGCGAAAGAACTTTTTCTTAGAGATGTAAACTATATCATTCGTGGAAAGGAGGTCCTGATTGTGGATGAGTTTACAGGTCGAGTTATGCAGgtgatcagtttatctcagttttggctttgtaaaaaca---aattttatggaacagaatctttagcataactgtgt-gtatactgtattcctt--tccatttcctatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16278936|gb|BI943171.1|BI943171EST: GTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAG GGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGG
genomic: GTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAGgtatttagag ... actctgatagGGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAATAAAAGCAAAAGAACTATTTCTTCGAGATGTAAACTACATCATTCGTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAGgtatttagagattctacttggcctcatggaaataaacaatttaactagccaaggcaaggagaatagtagtgccatcaatagcagttcttgatctacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG