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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAGgtactaagtgttgccttataccaatgtcctagttaattttctcctattctccagattgatgatcctagcgaattgtgatcctgttaacag

Basic information

species Glycine max
transcript GLYMA02G01000.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01000.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G01690.1 (Arabidopsis thaliana), 5'ss of exon 5
ACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAGgtactaagtg-ttgccttataccaatgtcctagttaattttctcctattctccagattgatgatcctagcgaattgtgatcctgttaacag
 || |||||||||||| |||| || || ||||| |||||  |||||||||||   |||||||| || ||||| |||||||||||   |||  ||| ||    | | |||   |    |         |   | || ||      |  |    |||  |   |   || ||||
GCGCCTGCCAAAACCACAGGGCCAAACAGTTGGTTCTTTCAGGAAGGGACTTCGAATGTTGCCAGAAGCAATATCTGCAAGgtatccagtacttgtctctctctattgttggaagggaaaagggaaaaactttcaaat-----gttttctgaaatcttttgcactttgacag

upper sequence: GLYMA02G01000.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 5'ss of exon 5
ACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAGgtactaagtgttgccttataccaatgtcctagttaattttctcctattctccagattgatgatcctagcgaattgtgatcctgttaacag-----------------------------------------------------------------------------------------
 ||| ||||||| |||||||| || || ||||||||||||  |||||||||||| |||||||| || |||||||||  |||||||    | |  |   | | | | ||       ||       |||   |  |  ||  | |  | ||    | || ||  |   |  |                                                                                          
GCGTTTGCCAAAGCCAAAGGGGCAAACGGTTGGATCTTTTAAGAAGGGACTTATTATGTTGCCAGAAGCAATTTCTAAAAGgtaccctttctcactgaaaatccaagttgagaaaaacaaatatctaagttgaatgtt--taactccagttgctggtaattatagaagtatcatctctatattggttatctatgctttttggtacatttaacatcctttgactgtttgacaatcttaattgagttgtattcaccttccag

upper sequence: GLYMA02G01000.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ34803 (Selaginella moellendorffii), 5'ss of exon 4
ACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAGgtactaagtgttgccttatac-caatgtcctagttaattttctcctattctccagattgatgatcctagcgaattgtgatcctgttaacag
 || ||||| |||||||||||||| ||||||||||| ||||| ||||| || |||  | | ||  | || ||  |  | | |||   | |      |  |   |  || |  | |||   || |  | |||                                         
GCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAAgtaagcaattacaattggtgtgctttgacacaattacggttgttgtgttcag---------------------------------------

upper sequence: GLYMA02G01000.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ23527 (Selaginella moellendorffii), 5'ss of exon 5
ACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAGgtactaagtgttgccttatac-caatgtcctagttaattttctcctattctccagattgatgatcctagcgaattgtgatcctgttaacag
 || ||||| |||||||||||||| ||||||||||| ||||| ||||| || |||  | | ||  | || ||  |  | | |||   | |      |  |   |  || |  | |||   || |  | |||                                         
GCGACTGCCGAAACCAAAGGGTCAAACTGTTGGATCATTTCGCAAGGGTCTCATCTCGCTTCCCAAGGCTATAGCATCGAAgtaagcaattacaattgctgtgctttgacacaattacggttgttgtgttcag---------------------------------------