1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAgtaagtgttaattggctcctcctcctgaatatcctagatagataataaaagcttaatagtatgaaacaagtttttcttgataaattctggttttgtgtagtactttcatgcattttacttttaaaaaacttttattcacttcttttccaattttgttttttttttcttctaaaaattcatcttacgtggcag
species | Glycine max |
transcript | GLYMA01G43540.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAA GGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGEST: gi|254337933|gb|GR845396.1|GR845396
genomic: GAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAgtaagtgtta ... tacgtggcagGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAG
EST: GAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAA GGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGEST: gi|254337934|gb|GR845397.1|GR845397
genomic: GAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAgtaagtgtta ... tacgtggcagGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAG
EST: GAAA-TGTTTATGCATC-ACAAAGAAAGCGGAAAGAGAGCTTAAATGGAA GGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGEST: gi|16347623|gb|BI973218.1|BI973218
genomic: GAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAgtaagtgtta ... tacgtggcagGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAG
EST: GAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAA GGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAG
genomic: GAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAgtaagtgtta ... tacgtggcagGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAgtaagtgttaattggctcctcctcctgaatatcctagatagataataaaagcttaatagtatgaaacaagtttttcttgataaattctggttttgtgtagtactttcatgcattttacttttaaaaaacttttattcacttcttttccaattttgttttttttttcttctaaaaattcatcttacgtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT