Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatccattctttgcttgctttgaaattcatgcattttatttctgccaattgttcttagtttttgaaatcattaaaatttttccccattttcctttttttaattgtgctttctttag

Basic information

species Glycine max
transcript GLYMA01G43150.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43150.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G105019_T01 (Zea mays), 5'ss of exon 9
AGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatccattctttgcttgctttgaaattcatgcattttatttctgccaattgttcttagtttttgaaatcattaaaatttttccccattttcctttttttaattgtgctttctttag
 |||||||| ||||||||||||||||| ||||| ||||| |||||||| || ||| |  |||| ||||| || ||| |||| || ||||  ||||| |||||| |      ||  || ||     |   ||| | || ||||       ||||| |||  ||  | | |  | |||     ||  || ||| |||                           
GGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGTGACATCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacg----tgatgtttggcccagct---aatac-tggatttgga----gccaactgtattttatgtctatactcac--gtatccttgcccgtttctgcag---------------------

upper sequence: GLYMA01G43150.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G149704_T02 (Zea mays), 5'ss of exon 9
AGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatccattctttgcttgctttgaaattcatgcattttatttctgccaattgttcttagtttttgaaatcattaaaatttttccccattttcctttttttaattgtgctttctttag
 |||||||| ||||| ||||||||||| ||||| || || ||||||||||| ||| |  |||| ||||| || ||| |||| || |||  |||||| |||||| |  |||        | | ||   |  | | | ||||||        |||| | |  ||  | | |  | |||     |   || |   |  | |                        
GGAAGAAAAACTTGAAGGTGATGCTGCATTGAACAAGTTCTTCCGTGATATCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGGACAAGTCATTCgtacgtgatc--------gttggcccagctaataacgcatttgga----accaactatattttatgtctatactcac--gtacccttgctgttcctgcag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207786479|gb|GD757122.1|GD757122
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193733135|gb|FK667980.1|FK667980
EST:     AAAATTGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: AAAA-TGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|254317701|gb|GR826685.1|GR826685
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208252523|gb|GE048327.1|GE048327
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|207796768|gb|GD768830.1|GD768830
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193374547|gb|FK341207.1|FK341207
EST:     TTACCAAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTACC-AAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208185854|gb|GD987043.1|GD987043
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|16343086|gb|BI968681.1|BI968681
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193477266|gb|FK443151.1|FK443151
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|22933326|gb|BU550465.1|BU550465
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         NNNGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193358620|gb|FK326660.1|FK326660
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTG
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTG
EST: gi|208256603|gb|GE054058.1|GE054058
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTTATTCTAACTTGATTGGAAAGAAGTGGG
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCT-AT-C-AACT-GATTGGAAAGAAGTGGG
EST: gi|23064464|gb|BU579237.1|BU579237
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGTTCAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208245515|gb|GE047425.1|GE047425
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTG
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTG
EST: gi|33389087|gb|CA852294.1|CA852294
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208201514|gb|GE000078.1|GE000078
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGACCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193408041|gb|FK374859.1|FK374859
EST:     TTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGA-GCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193710914|gb|FK646925.1|FK646925
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|254317168|gb|GR826113.1|GR826113
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TGGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193316912|gb|FK280360.1|FK280360
EST:     ATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: ATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208269415|gb|GE070339.1|GE070339
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAA
EST: gi|5342531|gb|AI794815.1|AI794815
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|6724926|gb|AW309325.1|AW309325
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|254317160|gb|GR826105.1|GR826105
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193653853|gb|FK598311.1|FK598311
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGA
EST: gi|208094089|gb|GD894514.1|GD894514
EST:     ATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: ATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208171339|gb|GD973192.1|GD973192
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208194555|gb|GD988090.1|GD988090
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|14125278|gb|BG789716.1|BG789716
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193368227|gb|FK330043.1|FK330043
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGT
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGT
EST: gi|208178004|gb|GD976459.1|GD976459
EST:     ATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: ATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|209712068|gb|BW674215.1|BW674215
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208179910|gb|GD979303.1|GD979303
EST:     AAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: AAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208282276|gb|GE075082.1|GE075082
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193465240|gb|FK430647.1|FK430647
EST:     GCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: GCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|207749597|gb|GD721519.1|GD721519
EST:     GATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: GATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|208194466|gb|GD992537.1|GD992537
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193557715|gb|FK512028.1|FK512028
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193413240|gb|FK377321.1|FK377321
EST:     TTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTACTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATC
genomic: TTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT-CTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATC
EST: gi|208059787|gb|GD858685.1|GD858685
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: gi|193676875|gb|FK619131.1|FK619131
EST:     TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC                         TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ctttctttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatccattctttgcttgctttgaaattcatgcattttatttctgccaattgttcttagtttttgaaatcattaaaatttttccccattttcctttttttaattgtgctttctttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG