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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACCCAAAGGTTTTTGATGGAAAACATGGAACTGTCTTGGATAGTGGCACAACTTATGCATACCTACCAGAATCTGCATTTCTTGCATTTAAACATGCTgtaagttctttctcataaatattactggagaaagttttttgagttagaatttttaatctcagatattttctaaaaaccttgactttcatgtgtaatgagg...

Basic information

species Glycine max
transcript GLYMA01G39800.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39800.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g40260.1 (Oryza sativa), 5'ss of exon 4
AAACCCAAAGGTTTTTGATGGAAAACATGGAACTGTCTTGGATAGTGGCACAACTTATGCATACCTACCAGAATCTGCATTTCTTGCATTTAAACATGCTgtaagttctttc-tcataaatattactggagaaagttttttgagttagaatttttaatctcagatattttctaaaaaccttgactttcatgtgtaatgagg---
| |||||||| | ||  |  | |||||||| |||||||| |||||||| || || ||||| ||||| || |||   |||||| ||||||||||| |||||||||||| |    | |||  |  | |      |  |||||||| ||     |||||   || | ||  |  |   |   |    ||| || | ||||       
AGACCCAAAGATATTCAACAGCAAACATGGCACTGTCTTAGATAGTGGAACCACATATGCTTACCTGCCTGAACAAGCATTTGTTGCATTTAAAGATGCTgtaagttatcaaatgatatctcctccacttttaccttttttgaattg---cttttaccatctgctaacta-tgctactttactattttatatttaatatatttc

upper sequence: GLYMA01G39800.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 5'ss of exon 4
AAACCCAAAGGTTTTTGATGGAAAACATGGAACTGTCTTGGATAGTGGCACAACTTATGCATACCTACCAGAATCTGCATTTCTTGCATTTAAACATGCTgtaag-ttctttctcat--aaatattactggagaaa---gttttttgagttagaatttttaatctcagatattttctaaaaaccttgactttcatgtgtaatgagg
|||||||| |||||||||||||||| |||| ||  || ||||||| || || || ||||| |||||||| ||| | ||||||   ||||||||  |||||||||| |||  | | ||  |  |  | ||          ||||||    ||    | | | |  |||  |  |  || ||| | | ||        |         
AAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGATAGCGGTACTACATATGCTTACCTACCTGAACCAGCATTTAAAGCATTTAAGGATGCTgtaagattcagttttatccagttcctgcttactctttctgtttttccctttgatttgtctgagttcaacttctgccttaaatcttagaaaggagcctacc------