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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcctccctgtgattgttattcatgctgaatttaatatgctcgctgttgaattcacatttagttgtataaataatttgtcaaaacttatgcatgctatacactttttaattatcgataatttaccatttttcccaacag

Basic information

species Glycine max
transcript GLYMA01G39330.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39330.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 7
TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgtt--ctttcctccctgtgattgttattcatgctgaatttaatatgctcgctgttgaattcacatttagttgtataaataatttgtcaaaacttatgcatgctatacactttttaattatcgataatttaccatttttcccaacag
| ||||||||| ||||||||||||||| ||||||||||||||||||||   |  |||   |   |     |  | |  |  |  || | ||  |         |||||||  ||  |   |  ||  | ||     |    |  |||  |                                          
TTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAGgtgagcactcccttcctcgcccact-ctgagtcaaaccttgacatatttataa--acattcacaggtacatacttgcatg-tgtgcgtgtatcattatatggca------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183033|gb|HO028296.1|HO028296
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
EST: gi|192326076|gb|FK016228.1|FK016228
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAA-TGCATCGTGGGAATTGGTTTCATCACTTTTGCTAG
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGG-AATTGGTTTCATCACTTTTGCTAG
EST: gi|193362647|gb|FK327389.1|FK327389
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
EST: gi|254318602|gb|GR832770.1|GR832770
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
EST: gi|254337733|gb|GR845303.1|GR845303
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgttctttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGT