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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAACATTGTGGTGCAATAACAGAATGTGTTGTTCGGAATTTCACGCGCCACATTCTTTCGGGCTTGGCTTACTTGCATAGCAAAAAAACAATTCATAGgtactggtcacctgcatgagatccgtgtctaactagtataagaaatctctaccagatatttgcgttaccattataaaaattactagttcctttttttttctttcagaaattactaattcaatttggaattagaacatctgatgtatatattttcttttgttgtatgtgtgtag

Basic information

species Glycine max
transcript GLYMA01G39070.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39070.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0567g00010.t01 (Vitis vinifera), 5'ss of exon 5
GTGAACATTGTGGTGCAATAACAGAATGTGTTGTTCGGAATTTCACGCGCCACATTCTTTCGGGCTTGGCTTACTTGCATAGCAAAAAAACAATTCATAGgtactggtcacctgcatgagatccgtgtctaactagtataagaaatctctaccagatatttgcgttaccattataaaaattactagttcctttttttttctttcagaaattactaattcaatttggaattagaacatctgatgtatatattttcttttgttgtatgtgtgtag
||||||||||||| || || ||||||| ||||||||| ||||| || ||||| |||||||| ||  |||||||||| || |||| ||| ||||| || |||||            ||  |||   | |   | || ||| |  | | | ||  |  ||||    |||  ||||| |   |||| ||     |    ||  | ||||||   |||                                                           
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgtaaca---------ataggattattatt--attattattattattat-tattat-tattattattattattatta--tttaccagagtgatgaaattaatctcagaacacactc----------------------------------------------------------

upper sequence: GLYMA01G39070.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 4
GTGAACATTGTGGTGCAATAACAGAATGTGTTGTTCGGAATTTCACGCGCCACATTCTTTCGGGCTTGGCTTACTTGCATAGCAAAAAAACAATTCATAGgtactggtcacctgcatgagatccgtgtc-taactagtataagaaatctctaccagatatttgcgttaccattataaaaattactagttcctttttttttctttcagaaattactaattcaatttggaattagaacatctgatgtatatattttcttttgttgtatgtgtgtag
||||||||||||| || || ||||||| ||||||||| ||||| || ||||| |||||||| ||  |||||||||| || |||| ||| ||||| || |||||            ||  |||   | |  | | || ||| |  | | | |||||||     | | |   ||||   |  | |  |    ||  | ||  |       | |  | ||||  || | |  ||| ||  |                                    
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgtaaca---------ataggattattattattattattattattattatttaccaga-----gtgatgaaatta---atctcagaacacactcatattaacaaaggagagtatcgaattgcatcttg--ttaaaatttgcag--------------------------------