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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTACAAGAGAATCTCCTCCAGCAGATTCTTTAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAGgtaattatctaggtcttatttggataaacttttcaataaacacttgtaagagaaaaaaaaataagaatataaaatgaaataagtttctttcaacttaaaattagcttatgcattgagttgctgcataacaatcataaaatactatggacattcattggattttgactgagtacatgattgtatgcag

Basic information

species Glycine max
transcript GLYMA01G38680.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38680.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 5'ss of exon 7
-----------------CATTTACAAGAGAATCTCCTCCAGCAGATTCTTTAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAGgtaattatctaggtcttatttggataaacttttcaataaacacttgtaagagaaaaaaaaataagaatataaaatgaaataagtttctttcaacttaaaattagcttatgcattgagttgctgcataacaatcataaaatactatggacattcattggattttgactgagtacatgattgtatgcag
                      || |||   |||||||||||||| ||| |  | ||| |  | |||||||||||||||||||| ||||||||| | ||||||  || |      || ||  ||| | |||  |||    || ||||      |   |   |     |   | ||     ||   |  | || |  |  ||                                                                                      
ATCACAGCGATCAGCCTTTCCGACTAGAACTTCTCCTCCAGCAGAATCTCTGACCAAAGCGATACGTGCCTGTCATTCCCAGCCTTTGTCCATGATGGAGgtaggtaacccaagtttcttacgatgatcttg-caagttgcaattgtcttgttatggagtctggctcttccacatctgccaatcatggtgcacccaatcat--------------------------------------------------------------------------------------

upper sequence: GLYMA01G38680.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 4
-----------------CATTTACAAGAGAATCTCCTCCAGCAGATTCTTTAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAGgtaattatctaggtcttatttggataaacttttcaataaacacttgtaagagaaaaaaaaataagaatataaaatgaaataagtttctttcaacttaaaattagcttatgcattgagttgctgcataacaatcataaaatactatggacattcattggattttgactgagtacatgattgtatgcag
                      || |||   |||||||||||||| ||| |  | ||| || | |||||||||||||||||||| ||||||||| | ||||||  || |      || ||   || | |||  |||    || ||||      |   |   |     |   | ||     ||   |  | || |  |  ||                                                                                      
ATCACAGCGATCGGCCTTTCCGACTAGAACTTCTCCTCCAGCAGAATCTCTGACCAAAGCTATACGTGCCTGTCATTCCCAGCCTTTGTCCATGATGGAGgtaggtaacccaagtttcttacaatgatcttg-caagttgcaattgtcttgttatggagtctggctcttccacatctgccaatcatggtgcacccaatcat--------------------------------------------------------------------------------------