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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatccttcttatacaatctactttcataatctacagtgcttgcatatgacattccccatatataattcaatttcttttatgtatatag

Basic information

species Glycine max
transcript GLYMA01G38640.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38640.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
TTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatcct---tcttatacaatctactttcataatctacagt-gcttgcata----tgacattccccatatataattcaatttcttttatgtatatag
|| |  ||||||| ||    ||  ||||||| || ||||||| |||| |  ||||||  |||||||||||||| |||||| |||||||||| || || ||||||  |   |||||| |  |||| |  || ||| |  | | |||||  ||    |||  |         |      || | | |      ||| ||
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctctcta-tcccaaaatgtttacttgcttgattagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag

upper sequence: GLYMA01G38640.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 11
TTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatccttcttatacaatctactttca-taatctacagtgcttgcatatgacattccccatatataattcaatttcttttatgtatatag
||||  ||||||| ||    ||||||||||| || |||||||||||| | |||||||  |||||||||||||| |||||  |||||||||| || || |||||    ||||||||  ||||     | |  | |||  |||||   || |   |    ||| |   |   |    |||   || ||| ||
TTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGgtacatctcttataccctctatagcaaattgtttact-tgctttagta-gttttgatgcatgtggcaaaaacaaccttccttgaatacag

upper sequence: GLYMA01G38640.3 (Glycine max), 5'ss of exon 7
lower sequence: PP1S395_19V6.1 (Physcomitrella patens), 5'ss of exon 7
TTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgta----tccttcttatacaatctactttcata-atctaca-gtgcttgcata--tgacattccccatatat---aattcaatttctt--ttatgtatatag-------------------------------------------------------------------------------------------
    | |  |  ||| |   | | |  ||   ||||||    | |   | |  ||||||||||| || || ||||| |||||| ||||||| |||||||||||     |||| |   |  || ||  |  ||| || || |  |  ||   |    || ||||   ||   |   |||| |   | ||  | |  ||  |||                                                                                           
GAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAAAAGCAGAAACTAACTCGTCATTGTGAGGTCACTGCCATACTTGTTCTGTATGGACTTCCTAGgtaagttcccttgtctgatgatatatatatatatatatatatataattatgttatcgagattcgttatccttgccaatttatgctattgttcacctacctagctgcatgtaaaatgccactgcagtttgttcccaatttttctgttcatttcccatcgttgtttactgatcgggggttgtttgaattctgcag

upper sequence: GLYMA01G38640.3 (Glycine max), 5'ss of exon 7
lower sequence: PP1S194_154V6.1 (Physcomitrella patens), 5'ss of exon 10
TTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtat-ccttcttatacaatct---actttcataatctacagtgcttgcatatgacattc---cccatatataatt-----caatttcttttatgtatatag----------------------------------------------------------------------------------
    | |  |    | | | |   | |||    |||||    | |   | |  |||||||||||||| || ||||| |||||  ||||||| |||||||||||   ||| || |    | |   | ||| ||    |    | ||   ||  |  ||||   || ||  ||  |      |  | |  |||||  | ||||                                                                                  
GAAAATCTAGAACTCCAACGAGGCATATGCGGGCTGAAAACCAGAAACTAACTCGTCATTGTGAAGTCACTGCCATCCTTGTCCTGTATGGACTTCCTAGgtaagtcttattttctggtttcttagtttgattggtttggttactaaaatccgttattcttaccaattcatgctcttgtacgctattgtttattcacatagttttatgcgtagtgaattgtagttttgctgttgtctactcatcaatgttgttcactgatgaattactgtctgggttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000679|gb|BI321493.1|BI321493
EST:     ATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAG                         GTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAG
genomic: ATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatccttct ... atgtatatagGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAG