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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCGGTGGAGTTGGATGGGTTAAAAAAGGCACATATTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcatttggattttatgtctaaagaatgttagttttttttggatgaggacagccatattttcattctgttctctctaaatttttatctttttatttttcattttaatctacataaaatgcaacatgttccgatttctgaggtataagataatgatacaaaagcttggttcaatgtgcag

Basic information

species Glycine max
transcript GLYMA01G38410.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38410.4 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g01300.t01 (Vitis vinifera), 5'ss of exon 7
AACTCGGTGGAGTTGGATGGGTTAAAAAAGGCACATATTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcatttggattttatgtct-----aaagaatgttagttttttttggatg-aggacagcc-atattttcattctgttctctctaaatttttatctttttatttttcattttaatctacataaaatgcaacatgttccgatttctgaggtataagataatgatacaaaagcttggttcaatgtgcag
||  | || ||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||| |    | ||| | |||     | | ||| |||  ||| | |  |   |  |||    || || ||  | | || | |  ||     || | |                                                                                          
AATCCAGTTGAGTTGGATGGATTAAGAAAGGCACACATTCGGGATGGTGCAGCTGTTGTGCAATATCTTGTTTGGCTGGATAAGCAGgtatgcttccccactttgtatcttccccagaaaattttaaatttctgtacaaatatcacattttatcttatctgtttattatataaaagacactaacata-----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193721886|gb|FK659434.1|FK659434
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTT-GGAGAAGGATTCTGTA
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGT-
EST: gi|193377357|gb|FK338795.1|FK338795
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193585459|gb|FK541140.1|FK541140
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193359415|gb|FK326334.1|FK326334
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193584992|gb|FK539399.1|FK539399
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTA
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTA
EST: gi|193684357|gb|FK621857.1|FK621857
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         GTGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|207848798|gb|GD818829.1|GD818829
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208098474|gb|GD896883.1|GD896883
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTT-GGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193433071|gb|FK398719.1|FK398719
EST:     AATATCTTGTCTTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: AATATCTTGTC-TGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193710974|gb|FK644717.1|FK644717
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193714379|gb|FK648930.1|FK648930
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGCTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193355074|gb|FK321269.1|FK321269
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGGATATTTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGG-ATATTT-ATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTG
EST: gi|193524772|gb|FK480095.1|FK480095
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAG
EST: gi|207773528|gb|GD744554.1|GD744554
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTAGGAAGAAAGGATTCTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGA-GAA-GGATTCTG
EST: gi|193629888|gb|FK575014.1|FK575014
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTT
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTT
EST: gi|193376901|gb|FK340536.1|FK340536
EST:     ATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: ATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193560897|gb|FK519336.1|FK519336
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208276645|gb|GE074799.1|GE074799
EST:     GGGATGGTGCTAGTCTAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: GGGATGGTGC-AG-C-AGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|207759138|gb|GD731705.1|GD731705
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208216917|gb|GE011211.1|GE011211
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGA-G                         NTGCAGGATATTTATGGAGCTT
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTT
EST: gi|208245851|gb|GE050631.1|GE050631
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193668247|gb|FK609293.1|FK609293
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193725217|gb|FK661079.1|FK661079
EST:     CTTGTCTGGCTTGGTATTAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTTGGAGAAGGATTCTG
genomic: CTTGTCTGGC-TGG-A-TAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTAC-TTTTTGGAGAAGGATTCTG
EST: gi|208061639|gb|GD857183.1|GD857183
EST:     CAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTAGAGAAGGATTCTGTG
genomic: CAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208277405|gb|GE081216.1|GE081216
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193509641|gb|FK471165.1|FK471165
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTT-GGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193573859|gb|FK529233.1|FK529233
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193530131|gb|FK486162.1|FK486162
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|207799895|gb|GD771036.1|GD771036
EST:     TCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGACTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGG-CTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193353273|gb|FK316045.1|FK316045
EST:     TGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208067081|gb|GD866863.1|GD866863
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|207700587|gb|GD683694.1|GD683694
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|207786242|gb|GD758649.1|GD758649
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193469517|gb|FK435919.1|FK435919
EST:     TGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTAC-TTTTGGAGAAGGATTCTGTG
genomic: TGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208204183|gb|GE006988.1|GE006988
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGG
EST: gi|193537111|gb|FK498850.1|FK498850
EST:     TCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|308222672|gb|HO760582.1|HO760582
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193679421|gb|FK621031.1|FK621031
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|308222671|gb|HO760581.1|HO760581
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|207834791|gb|GD808582.1|GD808582
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|207828028|gb|GD798843.1|GD798843
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGAAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193406402|gb|FK373051.1|FK373051
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208301071|gb|GE100738.1|GE100738
EST:     TGCAGCAGTTGTGCAATATTCTTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTCTTGGAGAAGGATTCTGTG
genomic: TGCAGCAGTTGTGCAATA-TC-TTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193455332|gb|FK419715.1|FK419715
EST:     TGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193510295|gb|FK469817.1|FK469817
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCGGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|6502373|gb|AW203746.1|AW203746
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCANGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208275725|gb|GE073851.1|GE073851
EST:     GGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: GGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|9820374|gb|BE555884.1|BE555884
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTNTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208341760|gb|GE139442.1|GE139442
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|208091547|gb|GD885924.1|GD885924
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193340716|gb|FK308337.1|FK308337
EST:     GTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTACTAG
genomic: GTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATT-CT-G
EST: gi|193419187|gb|FK382739.1|FK382739
EST:     CGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTAGGAATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGT
genomic: CGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCT-GG-ATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGT
EST: gi|254337587|gb|GR849433.1|GR849433
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|15001132|gb|BI321946.1|BI321946
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193471297|gb|FK438190.1|FK438190
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193622910|gb|FK572384.1|FK572384
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTT
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTT
EST: gi|15337002|gb|BI497658.1|BI497658
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193651184|gb|FK598975.1|FK598975
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|207728837|gb|GD708259.1|GD708259
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|298186383|gb|HO037016.1|HO037016
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193531419|gb|FK490917.1|FK490917
EST:     TGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|7588809|gb|AW704596.1|AW704596
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|254327081|gb|GR836690.1|GR836690
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|193509482|gb|FK468878.1|FK468878
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAG
EST: gi|193371457|gb|FK336942.1|FK336942
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|9902696|gb|BE611664.1|BE611664
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
EST: gi|15286677|gb|BI470568.1|BI470568
EST:     TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAG                         ATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG
genomic: TTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcattt ... caatgtgcagATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTCGGTGGAGTTGGATGGGTTAAAAAAGGCACATATTCGGGATGGTGCAGCAGTTGTGCAATATCTTGTCTGGCTGGATAAGAAGgtttgcatttggattttatgtctaaagaatgttagttttttttggatgaggacagccatattttcattctgttctctctaaatttttatctttttatttttcattttaatctacataaaatgcaacatgttccgatttctgaggtataagataatgatacaaaagcttggttcaatgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG