Sequence
atgc intronic sequence ATGC exonic sequenceGTTCGATTAGTTGCTGACAAAGATACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGgttgacactgattacttaatttgtttattatcactatggcttttaattcacatctttggtttgttttgcag
Basic information
species | Glycine max |
transcript | GLYMA01G38120.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G38120.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G113592_T02 (Zea mays), 5'ss of exon 7
GTTCGATTAGTTGCTGACAAAGATACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGgt-------------tgacactgatt----acttaatttgtttattatcactatggcttttaattcacatctttggtttgttttgcag---
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GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCATTGAGTATGTGCACACACGAGACATGAAAAgtaagtttctctttttgttgcaaattttccgtttggtttattctctttcataatagcttacattttctctgctaacttgggttctcaccag
upper sequence: GLYMA01G38120.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 7
GTTCGATTAGTTGCTGACAAAGATACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGgttgacactgattacttaa---tttgtttattatcac----tatggcttttaattc--------acatctttggtttgttttgcag----
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GTCCGACTCATTACCGACAAAGAGACTAGTAAACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAGgtttgctat-atagcttgagcatttattggttttcatctgatgtgctttatattttgtttctgaacaccacttgtttgtgtcaaattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208152647|gb|GD950466.1|GD950466EST: GCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAG CTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTG
genomic: GCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGgttgacactg ... tgttttgcagCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCGATTAGTTGCTGACAAAGATACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGgttgacactgattacttaatttgtttattatcactatggcttttaattcacatctttggtttgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA