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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGAGCATCCCAAACCCATTCAGCTGGCACGAGATTGAAAGAGGGTTGCCACATAAATCGTAGCTTACTAACTCTAGGAACTGTTATCCGCAAACTCAGgttagcttatgaagattgtgtttcaatatttgtgacttccctgattgcagaacatgagtacatgctcactttaagaattttttattctcttgccaaggag...

Basic information

species Glycine max
transcript GLYMA01G37340.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37340.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G51150.1 (Arabidopsis thaliana), 5'ss of exon 10
AGCGAGCATCCCAAACCCATTCAGCTGGCACGAGATTGAAAGAGGGTTGCCACATAAATCGTAGCTTACTAACTCTAGGAACTGTTATCCGCAAACTCAGgttagcttatga---agattgtgtttcaatatttgtgacttccctgattgcagaaca-tgagtacatgctcactttaagaattttttattctcttgccaaggag
| || ||||| ||| |    ||||||||||| || |||||||| ||| | || ||||| || || |||||||| ||||||||||| || || || || |||||||| | |||   | |  ||   | ||  | |||||  |     |    ||     |   ||     || || ||   |    |  ||     || ||    
AACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCGAAAGCTAAGgttagcctgtgacctatagcgtcaatgaaattctgtgatctgtgccaccttaggctgctctttattctttccctatattcaaagatggttaagcagctaa----

upper sequence: GLYMA01G37340.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 5'ss of exon 8
AGCGAGCATCCCAAACCCATTCAGCTGGCACGAGATTGAAAGAGGGTTGCCACATAAATCGTAGCTTACTAACTCTAGGAACTGTTATCCGCAAACTCAGgttag--cttatgaagattgtgtttcaatatttgtgacttccctgattgcaga-acatgagtacatgctcactttaagaattttttattctcttgccaaggag
|||| ||||| ||  |    ||||||||||| ||  ||||||| |||||||||||||| || || ||| |||| || |||||||||||||| || || |||||||   ||||    ||| | |||   ||| | |   ||  |   |||   | |  | || |  || |   |    ||   |       | |   || |   
AGCGTGCATCTCAGTCATTATCAGCTGGCACAAGGCTGAAAGAAGGTTGCCACATAAACCGCAGTTTATTAACCCTGGGAACTGTTATCCGTAAGCTAAGgttagattttatttttattctttttttttatatattttttttcattttgtttacaagtaagcatctggttgttccccgagaatcagtccatgtattcatg---