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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatgctccgctacattttgattttcctttcttttctgtggtaatttatctccaatagaacccacattattaaaataatgagtcacattggataa...

Basic information

species Glycine max
transcript GLYMA01G27120.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27120.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 8
GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgta---ttgaatgctccgctacattttgattttcctttcttttctgtggtaatttatctccaatagaacccacattattaaaataatgagtcacattggataa
|| ||  | ||||| || || || ||  | ||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||   ||  |   |  |  | | | | ||   |||||   || |   |   ||  | | ||   |      |||   |   |   | | |  ||   |    
GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgtacagtttcaaattgtgtgatactcttatgccccttttaattgttctggtcttgctttgcacatggtggtgcatggctttcaacttcatttccagatgt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193698260|gb|FK641487.1|FK641487
EST:     CGGCCGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: CGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
EST: gi|254340376|gb|GR858501.1|GR858501
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
EST: gi|208124378|gb|GD923250.1|GD923250
EST:     ATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: ATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
EST: gi|208248950|gb|GE046379.1|GE046379
EST:     CGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: CGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
EST: gi|254340375|gb|GR858500.1|GR858500
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtattgaatg ... tctctgacagACTAAAAGGTTCGTCAAAAGTTTAGAGTTGTCCTGAGCTGAGTTATCTTGA