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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattctttaccttttactggatttgggaatttcattattcatgtcatttgtcatctgaacaacaaaatgataattgaattagtgacattagtttctgtattcatgttggatgggttgctgtacgcctccctcccctctgtgttgcag

Basic information

species Glycine max
transcript GLYMA01G12340.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11411566|gb|BF423577.1|BF423577
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|208288972|gb|GE088009.1|GE088009
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAG
EST: gi|254330187|gb|GR839740.1|GR839740
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|31309088|gb|CD394291.1|CD394291
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACCTTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|13252312|gb|BG363215.1|BG363215
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|254314431|gb|GR832016.1|GR832016
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|9564183|gb|BE473692.1|BE473692
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|11275201|gb|BF325524.1|BF325524
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|10255901|gb|BE823667.1|BE823667
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|254338283|gb|GR849808.1|GR849808
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|7590561|gb|AW706311.1|AW706311
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTNCCTTAAGAACATTGCAGGAGAGACTGGAGAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|31466806|gb|CD408834.1|CD408834
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|31474882|gb|CD416910.1|CD416910
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
EST: gi|22524240|gb|BU083051.1|BU083051
EST:     ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAG                         GCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG
genomic: ACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGgtattcttta ... tgtgttgcagGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAG