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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGCCACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTAAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGgtaatactagatttagtctataatactctaatactaccattaaatgctttactggaatagcttggttgttagaatttatgggagtcaataaatatttaca...

Basic information

species Glycine max
transcript GLYMA01G09660.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 6
AATAGCCACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTAAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGgtaatactagatttagt--ctataatactctaatactaccattaaatgctttactg---gaatagcttggttgttagaatttatgggagtcaataaatatttaca
|||||| |||||||| || |||||||||||||  ||||||||||| ||||| ||||| ||| | |||||| | || || || ||  | || ||| |||||||| ||||  || |  |  |||   |  | ||  |     |||| |    ||| |      |||| ||||  |||   || | |   |  |  | ||  |     
AATAGCAACTATCCTGAAAAGAAACAGCCATGCATTTTCTGATGACAGGGTGTGTGTGAAAATTGATTGGTTGGAACAGCTAAACCGTCAATATATTCAGgtattactgaatatttttgctactttcatttatgatagagattacactgattattttccatatagattggcagttttcatgtttctaaaccttttaaggt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15812935|gb|BI785210.1|BI785210
EST:     TTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAG                         GTACAAGGAAGAGATCGTTTAGTTCTAAAATATATAGGAGAACAGCTGGGT
genomic: TTTGTGTAAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGgtaatactag ... taatatacagGTACAAGGCAGAGATCGTTTAGTTCTAAAATACATAGGAGAACAGCTGGGT