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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATTAACAGCTAAAGGTTCATTCCATGTCGCTGAGTATATTAGGAAGAGCAGAAACCTTTTATGGTTGAACCTTTACATGAATGACATTGGTGATGAGgtattctatctcaaacttgtcccctatttcacatagtgtgattatcataaatcttatcaaaattttcagtgtgaagtcatgcaatgaataggatccttaa...

Basic information

species Glycine max
transcript GLYMA01G04270.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04270.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 5'ss of exon 10
-CTCATTAACAGCTAAAGGTTCATTCCATGTCGCTGAGTATATTAGGAAGAGCAGAAACCTTTTATGGTTGAACCTTTACATGAATGACATTGGTGATGAGgtatt--ctatctcaaacttgtcccctatttcacatagtgtgattatcataaatcttatcaaaattttcagtgtgaagtcatgcaa--tgaataggatccttaa
    |||| |  | | |||| | || || || ||||| ||||| | |||   ||  |   |  |||||||||| |||||||||||||||||||| |||||||| ||  |  | |  |     | |  || | ||  |  ||   |||| |   ||   |||||  | |    |      |     ||  | | |||  |  ||  
TGAAATTAGCT-CCAGAGGTGCTTTTCACGTTGCTGAATATATCAAGAAAGCCAAGAGTTTGCTATGGTTGAATCTTTACATGAATGACATTGGAGATGAGgtgttgacatttttcagtcacttcaataatacagtttatgcagttatta---attacatcaagttctatgtttctgcttttaataactttagtagagtttttt-