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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGACTCGAGAGTTTGTCCATCTCATATTCTGGATTTCCAACCGGGTGAAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttactcatatccctaaatgcttaatgtttggagggccaatatactttggttctatttataagaaatatgttgtaataatttttagttttagtgcaaaa...

Basic information

species Glycine max
transcript GLYMA01G03720.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03720.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G23730.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCAGACTCGAGAGTTTGTCCATCTCATATTCTGGATTTCCAACCGGGTGAAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttactcat---------atccctaaatgcttaatgtttggagggcc--aatatactttggttctatttataagaaatatgttgtaataatttttagttttagtgcaaaa------
  | || ||  ||||| |||||||||| ||  || |||||||||  || |||||||| || ||  |||||||||| |||||||| ||||| ||||||||||||     |          ||  | ||||   |    ||       |   || ||||     || | ||   ||  ||     |   ||||  ||| || |   || |||       
TGCGGATTCACGAGTTAGTCCATCTCACATCTTGAATTTCCAACTTGGGGAAGCCTTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAGgttcgtctaacaaaaatgaatttcaaaatcactctcattaaccttacataaacataccaaaattttgttataaaacaactaactaacataagcttttgtctc--tggaaacttgcag

upper sequence: GLYMA01G03720.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G70410.1 (Arabidopsis thaliana), 5'ss of exon 4
CTCAGACTCGAGAGTTTGTCCATCTCATATTCTGGATTTCCAACCGGGTGAAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttact--catatccctaaatgcttaatgtttggagggccaatatactttggttctatttataagaaatatgttgtaataattt-ttagttttagtgcaaaa
||| || ||  |||||||||||||||| ||  || |||||||||| ||||| || ||| | ||| ||||||| || || ||||||||||| | |||| ||||| | |  ||   |  |  |  |||  | ||    | |   | |||          | | | |  |||   ||| | ||||||| | ||             
CTCTGATTCTCGAGTTTGTCCATCTCACATCTTGAATTTCCAACCTGGTGAGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcattaccaagccatttcactcttgttcttgtctgagatcaaata----------actaacaccaaagtggttttgataatttatcag-------------

upper sequence: GLYMA01G03720.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0127g00720.t01 (Vitis vinifera), 5'ss of exon 5
CTCAGACTCGAGAGTTTGTCCATCTCATATTCTGGATTTCCAACCGGGTGAAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttactcatatccctaaatgcttaatgtttggagggccaatatactttggttctatttataagaaatatgttgtaataatttttagttttagtgcaaaa---------
|||||||||  ||||||| || || ||||| |||||||| || || || || || |||||||||||||||||||| ||||||||||| ||||||||  ||||      | | |||      || ||| |||        | | |  ||| ||  | | || | |   |       ||   | | || | | | |||| |          
CTCAGACTCTCGAGTTTGCCCTTCACATATCCTGGATTTTCAGCCAGGGGAGGCATTTATGGTCCGAAACATTGCGAACATGGTTCCGCCATATGATCAGgtcctaaaaaacccc-----actcaatattttt----ttactctgtttttgtattttgtacaggtcttggaaatgaaagttctctattataattgcacagcatttcaat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481602|gb|AW200873.1|AW200873
EST:     AAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAG                         ACGAAGTATTCAGGAGCTGGGGCTGCCATTGAATATGCAGTATTGCATTTA
genomic: AAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttactcat ... gttattgtagACGAAGTATTCAGGAGCTGGGGCTGCCATTGAATATGCAGTATTGCATTTA
EST: gi|12691148|gb|BG157484.1|BG157484
EST:     TATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAG                         ACGAAGTATTCAGGAGCTGGGGCTGCCATTGAATATGCAGTATTGCATTTA
genomic: TATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttactcat ... gttattgtagACGAAGTATTCAGGAGCTGGGGCTGCCATTGAATATGCAGTATTGCATTTA
EST: gi|20813446|gb|BQ297924.1|BQ297924
EST:     AAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAG                         ACGAAGTATTCAGGAGCTGGGGCTGCCATTGAATATGCAGTATTGC
genomic: AAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttactcat ... gttattgtagACGAAGTATTCAGGAGCTGGGGCTGCCATTGAATATGCAGTATTGC
EST: gi|16995716|gb|BM085088.1|BM085088
EST:     AAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAG                         ACGAAGTATTCAGCAGCTGGGGCTGCCATTGAATATGCAGTATTGCATTTA
genomic: AAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttactcat ... gttattgtagACGAAGTATTCAGGAGCTGGGGCTGCCATTGAATATGCAGTATTGCATTTA
EST: gi|209715498|gb|BW684743.1|BW684743
EST:     AAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAG                         ACGAAGTATTCAGGAGCTGGGGCTGCCATTGAATATGCAGTATTGCATTTA
genomic: AAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttactcat ... gttattgtagACGAAGTATTCAGGAGCTGGGGCTGCCATTGAATATGCAGTATTGCATTTA