1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TACCCTTGTTCCATACTACCTTGAAGAGACAGCAAATTGGGGTCTTGATGTTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttttgtctttacaatgttatgtttccactctgtttctacatcaaactcacaaaaccaaacacttacatgtttggaagatgctgaatcaatgtg...
species | Glycine max |
transcript | GLYMA01G03260.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|120529201|gb|EH257335.1|EH257335
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGC-TTEST: gi|15815783|gb|BI788058.1|BI788058
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: CAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|15285990|gb|BI469890.1|BI469890
genomic: CAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TAATGAACTTCGTCCATCAGTTGAGCAGGCTCGCTTTAAAAGGAA-AACT GGTAAAGCAATGGGGATCATAAATEST: gi|20498717|gb|BQ273647.1|BQ273647
genomic: TAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAA-GGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAAT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|9902378|gb|BE611346.1|BE611346
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|20814673|gb|BQ299151.1|BQ299151
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|21887563|gb|BQ740776.1|BQ740776
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGGAACCCTACTGGTCAATGCCTTEST: gi|31561480|gb|CD487318.1|CD487318
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|23064381|gb|BU579154.1|BU579154
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|13480374|gb|BG509717.1|BG509717
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|20498442|gb|BQ273372.1|BQ273372
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|15285988|gb|BI469879.1|BI469879
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTEST: gi|193366000|gb|FK329021.1|FK329021
genomic: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACT
EST: TAATGAACTTCGTCAATCAGTTGAGCAGGTCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
genomic: TAATGAACTTCGTCAATCAGTTGAGCAGG-CTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCCTTGTTCCATACTACCTTGAAGAGACAGCAAATTGGGGTCTTGATGTTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACTgtatgtgttttgtctttacaatgttatgtttccactctgtttctacatcaaactcacaaaaccaaacacttacatgtttggaagatgctgaatcaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA