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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGAAGAAATGGGCTTCAACTACCTTCAAGAGGTCACTGGTGCAGGTGCTAGGAAAAATGCAGGGAAATTTGTTGTTCTACACCTCCGATTTGATAAGgtattacactttctacacctaatttcttcaagaggtcatctatgtatacaaggttgtaatgttcacatcttcatttatccttttatttgtgaaacattgttgctctattaatacatgcatttatctgtcagttaataattttggtgtataaaacgttttatggcag

Basic information

species Glycine max
transcript GLYMA01G02850.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294017|gb|FG987186.1|FG987186
EST:     CTAGGAAAAATGCAGGGAAATTTGTTGTTCTACACCTCCGATTTGATAAG                         GATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAA
genomic: CTAGGAAAAATGCAGGGAAATTTGTTGTTCTACACCTCCGATTTGATAAGgtattacact ... tttatggcagGATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAA
EST: gi|6481903|gb|AW201174.1|AW201174
EST:     TAGGAAAAATGCAGGGAAAATTGGTGGTTCTACACCTCCGATTTGATAAG                         GATATGGCAGCCCATTCGGCCTGC
genomic: TAGGAAAAATGCAGGGAAATTTGTTG-TTCTACACCTCCGATTTGATAAGgtattacact ... tttatggcagGATATGGCAGCCCATTCGGCCTGC
EST: gi|21677209|gb|BQ629560.1|BQ629560
EST:     CTAGGAAAAATGCAGGGAAATTTGTTGTTCTACACCTCCGATTTGATAAG                         GATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAA
genomic: CTAGGAAAAATGCAGGGAAATTTGTTGTTCTACACCTCCGATTTGATAAGgtattacact ... tttatggcagGATATGGCAGCCCATTCGGCCTGCGATTTTGGTGGAGGAAAAGCTGAAAAA