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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTACCCTAGATACTGCAGGAGGTCCTCTGGCTGCGTTATTCAAGATATGCCAAATGGGTATTCAAGGgtaagtcctatttctgaagtatttttaatttgttacgtgttccaatttttacaaacttggtgcttctaatggtttcatttccaacattttctggtgtaaatgtctaatttaatcgttttgttttgggactacatgtgtaaattgtag

Basic information

species Glycine max
transcript GLYMA01G01850.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01850.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0012g02030.t01 (Vitis vinifera), 5'ss of exon 7
TGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTACCCTAGATACTGCAGGAGGTCCTCTGGCTGCGTTATTCAAGATATGCCAAATGGGTATTCAAGGgtaagtcctatttctgaagtatttttaatttgttacgtgttccaatttttacaaacttggtgcttctaatggt-ttcatttccaacattttc------tggtgtaaatgtctaatttaatcgttttgttt---tgggactaca--tgtgtaaattgtag---------------------------------------
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CATTGATAGCTTCAATGACAATCTCCAACCTTCCGTGCCTAGATACAGGAGACGACCCTCTGGCTGCATTATTCAAGATATGCCAAATGGATACTCGAGGgtgtgttctactgtccctttttgtatacttagatcagtatgaagacatt--caattttgttggttttaatcttcttcgttttcttccgttaaaacaaacaccataaatgctaaattgagggctgcagaacagatagaacaataactactcaaatcctttctcatggtgggcgttttttttttttctttctcaatacag