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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCAAAGATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGGgttagtccctatgtcactgtagcttttatttctatttgcatgcaatgcagtagtgagaaactgagaattctttcttcttcatccctagttccctaccttt...

Basic information

species Glycine max
transcript GLYMA01G01170.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51344775|gb|CO985508.1|CO985508
EST:     GATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGG                         AGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGT
genomic: GATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGGgttagtccct ... tatgttgcagAGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGT
EST: gi|254332071|gb|GR846274.1|GR846274
EST:     GATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGG                         AGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGT
genomic: GATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGGgttagtccct ... tatgttgcagAGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGT
EST: gi|254330589|gb|GR841854.1|GR841854
EST:     GATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGG                         AGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGT
genomic: GATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGGgttagtccct ... tatgttgcagAGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGT
EST: gi|208255537|gb|GE055220.1|GE055220
EST:     GATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGG                         AGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGT
genomic: GATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGGgttagtccct ... tatgttgcagAGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATGCAAAGATAGGGATGCTAAACCTCAGAAATGGGAGGATGTAGCACCATTGAAGGGgttagtccctatgtcactgtagcttttatttctatttgcatgcaatgcagtagtgagaaactgagaattctttcttcttcatccctagttccctaccttt

- - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG