1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataatttatctgacttgtggctttaggaatgtaaatgaactttataccaacatcattttgatatttatgatctgtgaaattaatttcattagagtagcaattaattaatgattcaacctgattatccatacag
species | Glycine max |
transcript | GLYMA01G00870.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAG GAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACCEST: gi|192321852|gb|FK013230.1|FK013230
genomic: ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
EST: ATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAG GAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACCEST: gi|10237267|gb|BE806155.1|BE806155
genomic: ATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
EST: ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAG GAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACCEST: gi|6566092|gb|AW233852.1|AW233852
genomic: ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
EST: CTCAGAAGGGTGCATCTGCAATTTTTGAG GAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
genomic: CTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAAGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataatttatctgacttgtggctttaggaatgtaaatgaactttataccaacatcattttgatatttatgatctgtgaaattaatttcattagagtagcaattaattaatgattcaacctgattatccatacag
- - - - - TTGGAG
- - - - - TGGAGG
- - - - - - GGAGGA
- - - - - - GAGGAG
- - - - - - - AGGAGA
- - - - - - - GGAGAT
- - - - - - - - GAGATG
- - - - - - - - - GATGGA