Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCTGAGCAGCCACTCTGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCATTAAGgtaatatgatttttttttgtcacctgttaacattggagcttggaagactatgttgccattaactttggaaatatgttttctgcag

Basic information

species Glycine max
transcript GLYMA20G37700.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37700.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G27470.1 (Arabidopsis thaliana), 5'ss of exon 6
CTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCTGAGCAGCCACTCTGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCATTAAGgta---------ata-tgatttttttttgtcacctgttaaca-ttggagcttggaag-actatgttg--ccattaactttggaaatatgttttctgcag
|||||||||||||||||||||| || |||||||| ||||||||||| || ||||| || ||| | ||||| ||||| || || ||  |||| ||  |||||||         ||| | |    |  | |   | |    ||| |||   |||  | | | |  |     ||   ||| ||    || | |||  | |||
CTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGgtataaacaaacatagtaacacctactcgcagctttaagacaattgtttctttaatgtattgggaaaatccgccaacattatgtatttttttggtccag

upper sequence: GLYMA20G37700.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 6
CTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCTGAGCAGCCACTCTGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCATTAAGgtaa-tatgatttttttttgtcacctgttaacattggagcttggaagactatgttgccattaactttggaaatatgttttctgcag
||||||| ||||||||||||||| ||||||||||||| || || || |||||||| |||||||| ||||||||||| || ||| ||||| |||| |||||||||     | || |       |  |||       ||    |  || |  ||| ||   ||||  ||    | ||||||||  |||
CTGGTGAGGGAGATGACAAATATTTGATTGCAACAGCCGAACAACCCCTCTGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaacttgtgaaccctatttgtc--tcacggtatctacaaaagaatggtg--gttaatatt----acatgttttcc-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299348|gb|FG988719.1|FG988719
EST:     ACCCTACCCAGCTACCATTAAG                         ATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
genomic: ACCCTACCCAGCTACCATTAAGgtaatatgat ... ttttctgcagATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
EST: gi|151396984|gb|EV266857.1|EV266857
EST:     TGTGCATATCATTTAGATGATTGGATCCACCCTATCCAGCTACCATTAAG                         ATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
genomic: TGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCATTAAGgtaatatgat ... ttttctgcagATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
EST: gi|13788033|gb|BG650625.1|BG650625
EST:     TGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAATAAG                         ATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
genomic: TGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCATTAAGgtaatatgat ... ttttctgcagATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
EST: gi|207735695|gb|GD712176.1|GD712176
EST:     TATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAATAAG                         ATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
genomic: TATCATTTAGATGATTGGATCCACCCTACCCAGCTACCATTAAGgtaatatgat ... ttttctgcagATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
EST: gi|15814019|gb|BI786294.1|BI786294
EST:     TGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCATTAAG                         ATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG
genomic: TGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCATTAAGgtaatatgat ... ttttctgcagATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGATCTCATGGTCG