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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGGTTCAAAGTGACAGGGATGATCCCAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAGgtatatatgtacattacagataattgaaaaatgctgccatccttttaactaatgcttattgtaaacaatattctagaactaggatatataagattgttttttctatggatcttgtgctgcag

Basic information

species Glycine max
transcript GLYMA20G30610.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30610.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g34440.1 (Oryza sativa), 5'ss of exon 6
GACTTGGTTCAAAGTGACAGGGATGATCCCAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAGgtatatatg----tacattacagataattg------------aaaaatgctgccatccttttaactaatgcttattgtaaacaatattctagaactaggatatataagattgtttttt-ctatggatcttgtgctgcag----------------------
||     |||||   || ||||||||||| ||||||||| |||| ||||| || ||||||||||| || |||||||| |||    |    | |||||| ||              | ||| | |      ||   |||    | || | |   |||| |  |  |   |   |    |   || | ||   | |  | | | |  |   |                       
GAACGTATTCAAGCGGATAGGGATGATCCAAGCCTACCATTGGTCACTGCCCCATTTGGGCATGCTTCACAGgtatagatggcattgacatgcagatatttatttagcagagtagataataccgtgtcagttcacactgccacatactcttg-caatgtagtgaagtcactttggtaacagttatattgagccaacgttttcgacccaaatgtgactagtgtgatttttgcag

upper sequence: GLYMA20G30610.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G43690.1 (Arabidopsis thaliana), 5'ss of exon 6
GACTTGGTTCAAAGTGACAGGGATGATCCCAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAGgtatatatgtacattacagata-attgaaaaatgctgccatccttttaactaatgcttattgtaaacaatattctagaactaggatatataagattgttttttctatggatcttgtgctgcag-
|| |  ||||||   |||||||||||||| | ||| || || || |||||||| ||||| |||||||||||||||       | |  ||| | | |||  | |||   | |       |   ||||  ||  |   |    ||| ||     | |  |      ||||  ||| ||||||  |||| |  |     
GATTCAGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTAACTGCACCATTTGGACATGCCTCCCAGgta-------atagaacaaacacatttcagaatctagac-------tggttaattgtttctcctacttctatcctgtgttttgagttctactgatt--tttctctatgcctctttttttattag