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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatacatagaacttcataatcagttatagtcattaaatttgtaaatatattcatgcatatcattatgaaagaaacatactgaatgctgtagatgt...

Basic information

species Glycine max
transcript GLYMA20G28420.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 5
-------------------------------------TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatacatagaacttcataatcagttatagtca------ttaaatttgtaa-atatattcatgcatatcattatgaaagaaacatactgaatg-ctgtagatgt--------------------------------------------------------------------------------------------
                                      |||| ||||| |||||||||||  |||||||||| ||||| ||||| |||||||| |  ||||||   ||   |      ||| |   | || |  |||       |  ||  || | | |  || |  ||      | |   |||| |||| ||| || |||   ||                                                                                              
CTTACAGAAAAGTTTCATTTATTCGTTTTGGTCCCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaacagctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag

upper sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G094255_T01 (Zea mays), 5'ss of exon 6
TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatacatagaacttcataatcagttatagtca------ttaaatttgtaa-atatattcatgcatatcattatgaaagaaacatactgaatg-ctgtagatgt--------------------------------------------------------------------------------------------
 |||| ||||| |||||||||||  |||||||||| ||||| ||||| |||||||| |  ||||||   ||   |      ||| |   | || |  |||       |  ||  || | | |  || |  ||      | |   |||| |||| ||| || |||   ||                                                                                              
CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaacagctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag

upper sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 6
TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatacatagaacttcat--aatcagttatagtcattaa--atttgtaaatat---attcat--gcatatcattatgaaagaaacat-actgaatgctgtagatgt------
|||||||| || |||||||| ||  ||||||| || ||||||||||| |||||||| |  |||||||||  |     | |||  |  || ||      | || |||      || ||| |   ||   |   || | | || |  |  | |  | | | | | || |  ||        
TTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattaggattccaatctttcttaaagcatacgaggacaataacagaacgttaatgtttcatctgttgacaaacctttcttgataagatttgattcatttctatttattatgacag

upper sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G22425.1 (Arabidopsis thaliana), 5'ss of exon 5
-------------------------------------TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgta--ttaatacatagaacttc-ataatcagttatagtcattaaattt-gtaaatatattcatgcatatcattatgaaagaaa-catactgaatgctgtagatgt------------
                                     ||||||||||| || ||||| ||  ||||||| || ||||||||||| |||||||| | |||||||  ||   |   | | |||| | || |    | | ||||  | |||  | | | | |||   | | |   | || |  |   ||||     |    ||  |||            
AGTGTTGCCAAAAATTGTTTAACCTTTCGATTTGTAGTTGGTGGAGCACTTTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGgtactttgtgattcaaatcttccaaaagctaacaaaatcatgcagtttcatgagtttcttctatcctctgtctgtggaccatttcataacagttttaatatttgtttgttacaacag

upper sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G22425.2 (Arabidopsis thaliana), 5'ss of exon 6
TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgta--ttaatacatagaacttc-ataatcagttatagtcattaaattt-gtaaatatattcatgcatatcattatgaaagaaa-catactgaatgctgtagatgt------------
||||||||||| || ||||| ||  ||||||| || ||||||||||| |||||||| | |||||||  ||   |   | | |||| | || |    | | ||||  | |||  | | | | |||   | | |   | || |  |   ||||     |    ||  |||            
TTGGTGGAGCACTTTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGgtactttgtgattcaaatcttccaaaagctaacaaaatcatgcagtttcatgagtttcttctatcctctgtctgtggaccatttcataacagttttaatatttgtttgttacaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323948|gb|GR836180.1|GR836180
EST:     TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATT
genomic: TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATT
EST: gi|120496152|gb|EH224319.1|EH224319
EST:     TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
genomic: TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
EST: gi|192298863|gb|FG987608.1|FG987608
EST:     TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
genomic: TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
EST: gi|58021912|gb|CX708653.1|CX708653
EST:     TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
genomic: TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
EST: gi|16278546|gb|BI942961.1|BI942961
EST:     TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
genomic: TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
EST: gi|120528942|gb|EH257076.1|EH257076
EST:     TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
genomic: TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
EST: gi|16278135|gb|BI942744.1|BI942744
EST:     TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
genomic: TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
EST: gi|16105448|gb|BI893188.1|BI893188
EST:     TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
genomic: TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
EST: gi|192295567|gb|FG988141.1|FG988141
EST:     TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
genomic: TCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
EST: gi|209713507|gb|BW679284.1|BW679284
EST:     CACGTCTGGTATGACACTTCACATTCAGCAG                         CTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT
genomic: CACGTCTGGTATGACACTTCACATTCAGCAGgtattaatac ... ctgagcacagCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTT