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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTAAGACAGCATGGAGGACAGATGAGGAATTTGCAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTCCAAgtactgtataaaacaattgcaatttatagttacacaaaacttaaatgcagtttgttttgtttgacactgttttccgatcagaattaaagtttcatgtcta...

Basic information

species Glycine max
transcript GLYMA20G28290.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28290.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g03170.t01 (Vitis vinifera), 5'ss of exon 5
TGAGTAAGACAGCATGGAGGACAGATGAGGAATTTGCAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTCCAAgtactgtataaaacaattgcaatttatagttacacaaaacttaaatgcagtttgttttgtttgaca-ctgttttccgatcagaattaaagtttcatgtcta
  | ||  || || |||||||||||||| || |||| | | |||||||| ||||| || ||||||||||| ||||| || ||  |||||    ||  ||   || |||   |||  |      |  |||       |||| ||   |    | ||  | | | ||  | |                 
AAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGAGAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAAgta--aaattgaat--ttccaaccgataagttt--ggattttatggttcttttgcttcagtgactaactagtatgctatatgcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986168|gb|BE660276.1|BE660276
EST:     CAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGNCGTCTCCAA                         GAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACT
genomic: CAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTCCAAgtactgtata ... ccatatgcagGAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACT
EST: gi|15203969|gb|BI426746.1|BI426746
EST:     CAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTCCAA                         GAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACT
genomic: CAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTCCAAgtactgtata ... ccatatgcagGAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACT