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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTATCAGTGCCTCTGTATGATACTCTTGgtatgttgtctacaatttatctggaaatttcttttcttacatatctaccttggccttaccttcagatttaacagcaagaaactgcttgttctgtag

Basic information

species Glycine max
transcript GLYMA20G28200.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g04990.4 (Oryza sativa), 5'ss of exon 6
AGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTATCAGTGCCTCTGTATGATACTCTTGgtatgttgtctacaatttatctggaaatttctt-ttcttacatatctacc--ttggccttaccttcagatttaacagcaagaaactgcttgttctgtag
 | ||||| ||||||||||| |||||||||||||||  ||| ||||||||||| ||  | ||||| |||| |||||| ||||| || ||||||||||| ||||||   ||  ||  | ||    |  | |||  || | |  |||||| |     |  |||  |   | ||  ||||                      
CGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTGATCATGCCTGTGCGGCATATTCATATGTATCCGTGCCACTTTATGATACTCTAGgtatgcactcatcacataatgatcatctatctccttttcatttatctagcaacaagttttatgtattgtttatacag----------------------

upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g04980.1 (Oryza sativa), 5'ss of exon 6
AGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTATCAGTGCCTCTGTATGATACTCTTGgtatgttgtctacaatttatctggaaatttcttttcttacatatctaccttggccttaccttcagatttaacagcaagaaactgcttgttctgtag
 | ||||| ||||||||||| ||||||||||||||| |||| ||||||||||| ||  | ||||| ||||| || || ||||| || ||||| ||||||||||||   | | ||    |  ||   || | | | ||||   ||  | || |     |  || |  |  | | |||                    
TGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGATCATAGTTGATCATGCCTGTGCAGCATATTCATTCGTGTCTGTGCCACTTTATGACACTCTTGgtatgcactattca--ccaaatgatcatctatatccttat-cattcatctagcaacaatatttatgta-atctgcag-------------------

upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g04980.2 (Oryza sativa), 5'ss of exon 6
AGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTATCAGTGCCTCTGTATGATACTCTTGgtatgttgtctacaatttatctggaaatttcttttcttacatatctaccttggccttaccttcagatttaacagcaagaaactgcttgttctgtag
 | ||||| ||||||||||| ||||||||||||||| |||| ||||||||||| ||  | ||||| ||||| || || ||||| || ||||| ||||||||||||   | | ||    |  ||   || | | | ||||   ||  | || |     |  || |  | |||     ||   | |            
TGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGATCATAGTTGATCATGCCTGTGCAGCATATTCATTCGTGTCTGTGCCACTTTATGACACTCTTGgtatgcactattca--ccaaatgatcatctatatccttat-cattcatctagcaacaatattta--tgtaatctgcaggtccag------------

upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G059381_T01 (Zea mays), 5'ss of exon 6
AGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTATCAGTGCCTCTGTATGATACTCTTGgtatgttgtctacaattt----atctggaa-atttcttttcttacatatctaccttggccttaccttcagatttaacagca--agaaactgcttgttctgtag
 | |||||  | |||||||| |||||||| |||||| ||||  |||| ||||||||  | |||||||||| |||||| ||||| || ||||||||||| |||||||| | |    ||     ||  | |  |   ||   | |  ||||  |          |  || ||    || || |  | | ||     || ||    
CGAATTGGTCTATATTTTATAAACAGACCGGAGTGGATCATACTTGACCATGCTTGTGCGGCATACTCATATGTATCTGTGCCGCTTTATGATACTCTCGgtatgttctttttttttctcgaatgcgaaggagaactgcacatctatattaagaagaaaacgagtttaaggcccaagaggaccaaatacaagaagtcctt---

upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 6
AGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTATCAGTGCCTCTGTATGATACTCTTGgtatgttgtctacaatttatctggaaatttcttttcttacatatctaccttggccttaccttcagatttaacagcaagaaactgcttgttctgtag
  | ||||  | || || || ||  | || |||||||||||||||||||||||||| ||| | || || | ||| || || ||| |||||||||||||||||| ||  |||    ||  |  ||    || ||| |    || ||    || |       |||  |||   |     |    ||||          
TCTGTTGGAATTTACTTCATCAATCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTTCTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGgtaagt-atct--ggttggttcggcgtattatttcc----atttcacaattcgtggggtgttctaattctgctctttgtttttgctcaag------

upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 6
AGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGTTGATCATGCTTGCTCTGCATACTCATTTGTATCAGTGCCTCTGTATGATACTCTTGgtatgttgtctacaatttatctggaaatttcttttcttacatatctaccttggccttacc---------------ttcagatttaacag---caagaaactgcttgttctgtag
 || ||||  | |||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| ||| | ||||| |||||||||  ||  |     |||  | |  || ||| |     |   |  ||| |||||||  |||                | |   ||||||    |  || | |  ||| |||| ||
TGTGTTGGCCTATATTTTATCAACAGACCTGAGTGGCTCATTGTTGATCATGCCTGCTCTGCATTTTCATATGTATCAGTTCCTTTATATGACACTCTTGgttcgtaattggttatt-gtataaaactttatcggacttt-tgcctagcttggccaaaccactgctacaaatctactaaagcttaacaaagccttgataattgttgctctgcag