1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTGTTTTCTTACCAATCCTCGTGGCAGCTATGATTGCTGTCTCTCGTGTTGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcccgaagccagattgattatatatttcaataaacccttttgaaaagtttctgatacgaatgtcttttaccag
species | Glycine max |
transcript | GLYMA20G25650.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAG GGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGEST: gi|151410752|gb|EV280567.1|EV280567
genomic: GATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcc ... cttttaccagGGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATG
EST: TGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATGG GGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGEST: gi|7926175|gb|AW832201.1|AW832201
genomic: TGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcc ... cttttaccagGGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATG
EST: TGGCAAGATGTGTTTGCTGGAGCTCTTATAG GGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGEST: gi|151413050|gb|EV282858.1|EV282858
genomic: TGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcc ... cttttaccagGGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATG
EST: TGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAG GGATGATAATTGCTTCATTTTGTTACTT
genomic: TGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcc ... cttttaccagGGATGATAATTGCTTCATTTTGTTACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTTTTCTTACCAATCCTCGTGGCAGCTATGATTGCTGTCTCTCGTGTTGATGATTACTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTTATAGgtttgtttcccgaagccagattgattatatatttcaataaacccttttgaaaagtttctgatacgaatgtcttttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT