1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTGGTTACAATGTTATTTCTTATGATCATCCAACACGATTGAAAACTGGCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAGgttagtttttgctcacttctgttttccgagaatctaacgtttatacctgctttgattatctgtgctttttgcatgcaatctttgtcatatcaactggaaacatgagggtgatgcag
species | Glycine max |
transcript | GLYMA20G25020.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAG GTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGATEST: gi|58021857|gb|CX708598.1|CX708598
genomic: GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAGgttagttttt ... ggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT
EST: GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAG GTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGATEST: gi|8284024|gb|BE021583.1|BE021583
genomic: GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAGgttagttttt ... ggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT
EST: GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAG GTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT
genomic: GCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAGgttagttttt ... ggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGTTACAATGTTATTTCTTATGATCATCCAACACGATTGAAAACTGGCATGGAGCTTTTAAGTGCTACTCAAGAAATCGAGTCACAATTACACAAGgttagtttttgctcacttctgttttccgagaatctaacgtttatacctgctttgattatctgtgctttttgcatgcaatctttgtcatatcaactggaaacatgagggtgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA