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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattaatattactgattatatacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag

Basic information

species Glycine max
transcript GLYMA20G24790.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 6
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatac-atctttggaaaagaaattataacaca--ttaatattactgattatatacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag
|||||| ||||| || ||||| ||||| || ||||| || ||||| ||  ||||||||| |||  | ||||||||||||||||||||||||||||| |||||   | | |  |  |  | | ||||| |      ||  |  | ||| ||||   |||     |  ||||      |  | |  |                                                        
TGAGGCGGAAGTGCGGATAGCGGCTGCAGGGAAAGTTACTAAGTTCTGTAGGATTTTAAGTCCTCAGCTTGCAATTCAGCATATTCTTCCTTGTGTCAAGgtgggccaacgcttaaccaaatattattaactggttttctgctgctgtttattcccagcaaactaacttgccaactgcatctgcag-------------------------------------------------------

upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattaatattactgattatatacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag
|||||||||||| || |||||||||||||||||||| || ||||||||||| || ||||||||  | ||  || | || ||||||||||| || || |||||          || |||| ||||||   |||  | | |   ||              || |  ||  | |  ||   | || |||    |  || |    || |||||                             
TGAGGCTGAAGTGCGGATAGCAGCTGCTGGAAAAGTAACTAAGTTTTGCCGCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtggg-------ggcaaagcaattattgaacaccatt-tcgttg--------------ctatttttcttctgagtgaattaactcat---gccaagt--gcatctacag-----------------------------

upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattaatattactgattatatacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag
|||||||||||| || ||||| |||||||||||||| || ||||| ||||| || ||||||||| | ||| |||| || ||||||||||| || || |||||             |||| ||||||  |   ||  |  || |  || | |      |  ||   | |||   | |  |    |   |||                                                
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgc-------aaagcaattatt-cgttttgttgctatt--ttttttctgagtgaattaactagttcatgctaattgcatttatag------------------------------------------------

upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaattat--aacacattaatattactgattatatacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag
|||||||||||| || |||||||| || ||||||||||||||||| || ||| |||| |||||||| ||||| |||||||| || ||||||||||||||||||    || ||  |    | || |   |     || || |  |   |    || | |  ||         |   || || ||                                                         
TGAGGCTGAAGTGCGAATAGCAGCAGCGGGAAAAGTGACCAAGTTCTGTCGGCTTTTGAATCCAGAGCTTGCGATTCAGCACATCCTTCCTTGTGTGAAGgtaagactccttaaattctatataaacgagttgtttgatgtcccctgtctcgta-atattctgatacatactgatgtctggcag--------------------------------------------------------

upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 5
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattaatattactgattat--atacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag
||| ||||||||||||||||||||||| |||||||| || |||||||| |||||| |||| || ||  |||| || ||||| ||||| || |||||||||||| |    |  |  ||   |||| |    ||      |||| ||  ||  |   | ||   || | |  |  || |   ||   | | |  | ||  | ||                                      
TGAAGCTGAAGTACGCATAGCAGCTGCCGGAAAAGTTACAAAGTTTTGTCGGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAGgtacatgcttaagagaattcaattgttttccaagttccttacagaaaatcaacgtatagttgttgcatattactgatgattcctcttaat--gctacctgtag-------------------------------------

upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 6
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattaatattactgattatatacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag
|||||| ||||| || |||||||||||||||||||| ||||||||||| || |||||||| || || || || || ||||| |||||||| ||||| |||||| |||  |     ||  | | | |      || ||||||   |    |   | |  || ||  ||  |||| |  |   |   |      ||||| || |  ||                                
TGAGGCAGAAGTTCGGATAGCAGCTGCTGGAAAAGTTACCAAGTTTTGTCGCATTTTAAACCCTGAACTCGCTATCCAGCACATTCTTCCCTGTGTAAAGgtacacactt-----aagaagagtgtgttgatttcatattatgcaaaggaccaaaatactgtcggtg--tttgctaagcttaccta------taaatctacacgtag-------------------------------

upper sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaat--tataacacatta-atatta-ctgattatatacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag
||||||||||||||| |||||||||||||| ||||| || || || || | ||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||   ||  |||   |||  | |  |       |||| ||| |  ||  || | | ||    ||| |  | |   |  | ||   |     |  | |   |  ||||||   | | | | ||  | |               
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgc--acctgttgagctttctcaatatttggtgatgtcattttgtag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207745402|gb|GD715448.1|GD715448
EST:     TTCAGCATATTCTTCCTTGTGTGAAG                         GAATTGTCATCAGATTCTTCACAGCATGTCCGGTCTGCTTTGGCTTCAGTA
genomic: TTCAGCATATTCTTCCTTGTGTGAAGgtatacatct ... acttttgcagGAATTGTCATCAGATTCTTCACAGCATGTCCGGTCTGCTTTGGCTTCAGTA