1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCTTTAGGGCGTTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactttttatttttatttttgcataacatcattgataatttattctggttctcgtgttacgtagttatggttgtgtttagggtggctaaaagatgggaaataattaattcaaactctggtgacaggactgttggatggaaaatactaactgaatttttttctgtgcag
species | Glycine max |
transcript | GLYMA20G22600.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|12773850|gb|BG238777.1|BG238777
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGATAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|208162047|gb|GD960160.1|GD960160
genomic: ATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGEST: gi|19052551|gb|BM731218.1|BM731218
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|15287684|gb|BI471575.1|BI471575
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|209699787|gb|BW655800.1|BW655800
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAAGTGCAA-EST: gi|14990268|gb|BI315941.1|BI315941
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAA-GTGCAAA
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|27426708|gb|CA938228.1|CA938228
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|11413300|gb|BF425311.1|BF425311
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|192296530|gb|FG991636.1|FG991636
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|16997007|gb|BM086379.1|BM086379
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|208183454|gb|GD981508.1|GD981508
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|15000029|gb|BI320843.1|BI320843
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|192321549|gb|FK012899.1|FK012899
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|193377439|gb|FK339255.1|FK339255
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|14990090|gb|BI315763.1|BI315763
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|254333709|gb|GR848627.1|GR848627
genomic: ATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTG-AGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACAEST: gi|120492579|gb|EH220746.1|EH220746
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACA
EST: TCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|9205156|gb|BE331380.1|BE331380
genomic: TCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|254327042|gb|GR836651.1|GR836651
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGEST: gi|22525150|gb|BU083970.1|BU083970
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGEST: gi|13481244|gb|BG510587.1|BG510587
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
EST: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTG GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
genomic: ATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactt ... ttctgtgcagGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTTAGGGCGTTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGgtatagactttttatttttatttttgcataacatcattgataatttattctggttctcgtgttacgtagttatggttgtgtttagggtggctaaaagatgggaaataattaattcaaactctggtgacaggactgttggatggaaaatactaactgaatttttttctgtgcag
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