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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCAACTGGTGAAACTCCAAATGTTTCTGAGGCGATTGAGGAACAACAGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgatacttgaacttgccaatttatttaaggcttattactgtagggttgaacatgttacatacctgtcatgcattcatgctcaattctgatctat...

Basic information

species Glycine max
transcript GLYMA20G18440.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17402141|gb|BM178923.1|BM178923
EST:     AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG                         GCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
EST: gi|192305355|gb|FG994037.1|FG994037
EST:     AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG                         GCTGCCATTGTGAATTTTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
EST: gi|120494048|gb|EH222215.1|EH222215
EST:     AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG                         GCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
EST: gi|151394202|gb|EV264073.1|EV264073
EST:     AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG                         -CTGCCATTGTGA-TTCTCAGACTCTTGAAGAG-TTGCTAG-CTTGAAAAG
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
EST: gi|16343914|gb|BI969509.1|BI969509
EST:     AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAG                         GCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG
genomic: AGACGCCCAAAGTGGTTGCTCCTACACCTGAGCAAATTATTGCTATTAAGgtacaatgat ... ctttatgcagGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGGCTTGAAAAG