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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGCGCTGGTCTTCCTGTGATAGCATCACTGAATCGCATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGgtatatatatctttcatgatcctataattacatatttttttggttttccatcatgcattcttgttaggaagaagaaattgtatttttgatgttgtattttatgctacttgctcttattag

Basic information

species Glycine max
transcript GLYMA20G11950.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G11950.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G21060.3 (Arabidopsis thaliana), 5'ss of exon 6
GTAGGCGCTGGTCTTCCTGTGATAGCATCACTGAATCGCATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGgtatatatatctttcatgatcctataattacatatttttttggttttccatcatgcattcttgttaggaagaagaaattgtatttttgatgttgtattttatgctacttgctcttattag
|| || |||||||||||||| || |||||  |||| |||||||| || ||||| ||||| ||||||   ||| | || |||||||||||||   | |  |   ||| |  |           ||||| |  |        ||||||   |  |      | | |  | | | |  | | | |   || ||| ||              
GTTGGTGCTGGTCTTCCTGTCATCGCATCCTTGAACCGCATAATTTCGTCTGGAGATCCTGTTCATAGGATTGTCGGTAGTTTGAGCGgtaagcagacttcagatgtttat---------cgtttttcttatcccaatatatgcatgtattatttatttacgtatctttgtatccgttctcga--ttaatgatag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899975|gb|BE608943.1|BE608943
EST:     CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCG                         GGACATTGGGTTATGTAATGAGTGAGGTTGAAGATGGAAAGCCATTGAGCC
genomic: CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGgtatatatat ... ctcttattagGGACATTGGGTTATGTAATGAGTGAGGTTGAAGATGGAAAGCCATTGAGCC
EST: gi|193539305|gb|FK497715.1|FK497715
EST:     CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCG                         GGACATTGGGTTATGTAA
genomic: CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGgtatatatat ... ctcttattagGGACATTGGGTTATGTAA
EST: gi|193727061|gb|FK660275.1|FK660275
EST:     CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCG                         GGACATTGGGTTATGTAA
genomic: CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGgtatatatat ... ctcttattagGGACATTGGGTTATGTAA
EST: gi|193721822|gb|FK658306.1|FK658306
EST:     CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCG                         GGACATTGGGTTATGTAA
genomic: CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGgtatatatat ... ctcttattagGGACATTGGGTTATGTAA
EST: gi|193711761|gb|FK647860.1|FK647860
EST:     CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCG                         GGAACATTGGGTTATGTAA
genomic: CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGgtatatatat ... ctcttattagGGA-CATTGGGTTATGTAA
EST: gi|298178813|gb|HO024548.1|HO024548
EST:     CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCG                         GGACATTGGGTTATGTAATGAGTGAGGTTGAAGATGGAAAGCCATTGAGCC
genomic: CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGgtatatatat ... ctcttattagGGACATTGGGTTATGTAATGAGTGAGGTTGAAGATGGAAAGCCATTGAGCC
EST: gi|18040511|gb|BM308805.1|BM308805
EST:     CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCG                         GGACATTGGGTTATGTAATGAGTGAGGTTGAAGATGGAAAGCCATTGAGCC
genomic: CATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGgtatatatat ... ctcttattagGGACATTGGGTTATGTAATGAGTGAGGTTGAAGATGGAAAGCCATTGAGCC