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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGGTAATCTGAAGCTTGCTGATTTTGGACTGGCACGGTCATTTTCTAACGAGCACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGgtaatttatgtccataataggttttaattttgacctaagttcttttgggagggttgcatcatgaacttatgcccatacacattattgatttatttcattatattattag

Basic information

species Glycine max
transcript GLYMA20G10960.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G10960.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g32360.1 (Oryza sativa), 5'ss of exon 7
ATGAAGGTAATCTGAAGCTTGCTGATTTTGGACTGGCACGGTCATTTTCTAACGAGCACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGgtaatttatgtccataa--taggttttaattttgacctaagttcttttgggag--ggttgcatcatgaacttatgcccatacacattattgatttatttcattatattattag
||||||||||  ||||||| ||||||||||| || ||| | |||||||| || || || || | |||||| || |||||||| ||||| || ||||||||||| |  |     || |  | |   || | |||  | ||   | || ||| |    |||    | || | | ||||  |  ||  ||    ||   |||||            
ATGAAGGTAACTTGAAGCTGGCTGATTTTGGCCTAGCAAGATCATTTTCAAATGATCATAACGGAAATCTCACTAATCGTGTGATCACTTTGTGGTACAGgtattgcagaattatgaacttgccattgaattttgcatattgtgttatggtatttagtttttgcttgga-tcatgctgac-cat-ttgccaatgattttcag-----------

upper sequence: GLYMA20G10960.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G028452_T02 (Zea mays), 5'ss of exon 6
------ATGAAGGTAATCTGAAGCTTGCTGATTTTGGACTGGCACGGTCATTTTCTAACGAGCACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGgtaatttatgtccataataggttt-taattttgacctaagttcttttgggagggttgcatcatgaacttatgcccatacacattattgatttatttcattatattattag
      | || |||||  | ||||||||||||||||| || ||| | ||||| || | ||| ||||||| ||| ||||| || ||||| ||||| || ||||| ||||| | | | |    | | | | | | ||  ||     ||                                                                      
TAGATAACGAGGGTAACTTAAAGCTTGCTGATTTTGGCCTTGCAAGATCATTCTCCAGCGATCACAATGGAAACCTTACCAACCGTGTGATCACTTTGTGgtataggtattgtctattttcactggttctgttatcatgtttacag----------------------------------------------------------------------

upper sequence: GLYMA20G10960.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0009g01800.t01 (Vitis vinifera), 5'ss of exon 8
ATGAAGGTAATCTGAAGCTTGCTGATTTTGGACTGGCACGGTCATTTTCTAACGAGCACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGgtaatttat--gtccataataggttttaattttgacctaagttcttttgggagggttgcatcatgaacttatgcccatacacattattgatttatttcattatattattag
|||| || ||| |||||||||| |||||||| || || ||||||||||| || || |||||||  ||||||||||||||||| || || |||||||||||||||    |    |    || |||    |     ||  |  ||    | | ||  |      ||    | | |  |||  || |  || |   ||  ||  || | |  ||
ATGAGGGAAATTTGAAGCTTGCAGATTTTGGCCTTGCCCGGTCATTTTCAAATGATCACAATGGGAATCTTACAAATCGTGTTATTACCTTATGGTACAGgtaagcagttaaactcccatgggtagaga-----actcagatttcagtagcagcctctttctattccttaaggagcattaac-tgtttaaccaatccca--atttgaacag