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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCTTGGGACTTTGATGTTGAGAACAATTTTATAATCCATTATACTTATGCATGTGACTACAATTTAAAGgttagtttatttcttcttactttaaattgtatattaaagtaaggtaacaagagtgtggttccttgattaatattccctttgcttttatgtctgcccttgtgcaaaattagggtcttgcatgtctatctttgcttgttgcataagtcaactactcctactacttatatattcag

Basic information

species Glycine max
transcript GLYMA20G08020.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G08020.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 5'ss of exon 6
CCACCTTGGGACTTTGATGTTGAGAACAATTTTATAATCCATTATACTTATGCATGTGACTACAATTTAAAGgttagtttatttct-tcttactttaaattgtatattaaagtaaggtaacaagagtgtggttccttgattaatattccctttgcttttatg-tctgcccttgtgcaaaattagggtcttgcatgtctatctttgcttgttgcataagtcaactactcctactacttatatattcag
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CCTCCATGGGATTTGGAAGTTGGGAAGAAGTTTATTATCCATTATACATATGGATGTGACTACAATTTGAAGgtaaaagattctctctctctctctcaactgc-tgttcactggtttacattactattttattattgaaatggtagtgcacttgctttactgatttatgcctt--------------------------------------------------------------------------